Miyakogusa Predicted Gene

Lj4g3v0720730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0720730.1 tr|B9IBM8|B9IBM8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_571999 PE=4
SV=1,78.85,5e-17,seg,NULL,CUFF.47959.1
         (111 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g17040.1                                                       107   3e-24
Glyma17g17050.3                                                       104   2e-23
Glyma17g17050.1                                                       104   2e-23
Glyma17g17050.4                                                       104   2e-23
Glyma17g17050.2                                                        71   2e-13

>Glyma17g17040.1 
          Length = 251

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 3   ATLQSLRPPFRFHXXXXXXXXXXXXXXXXXFSSSKLMRSKGSVFFTRKRTDASVVRASNS 62
           ATLQSL P FR                     S KL+ SKG     R    +  V  SNS
Sbjct: 2   ATLQSLPPSFRPSIPPPNSHSFPATPFNY---SPKLIASKGVSVTLRNSITSPRVSVSNS 58

Query: 63  EYSPSITENLGDVSIFTAAGQPVMFKDLWDQNQGVAVVALLRHFGCPC 110
           EYSP I ENLGDV+IFTAAG+PV F DLWDQNQGVAVVA+LRHFGC C
Sbjct: 59  EYSPQIAENLGDVTIFTAAGEPVRFSDLWDQNQGVAVVAMLRHFGCIC 106


>Glyma17g17050.3 
          Length = 224

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 64/108 (59%), Gaps = 3/108 (2%)

Query: 3   ATLQSLRPPFRFHXXXXXXXXXXXXXXXXXFSSSKLMRSKGSVFFTRKRTDASVVRASNS 62
           ATLQSLRP FR                     S K + SKG     R    +  V  SNS
Sbjct: 2   ATLQSLRPSFRPSIPSPNSHTFPATPFNY---SPKSIGSKGGSVTVRHSIVSPRVSVSNS 58

Query: 63  EYSPSITENLGDVSIFTAAGQPVMFKDLWDQNQGVAVVALLRHFGCPC 110
           EYS  I ENLGDV+IFTA G+PV F DLWDQ+QG+AVVALLRHFGCPC
Sbjct: 59  EYSTQIAENLGDVTIFTATGEPVRFSDLWDQSQGIAVVALLRHFGCPC 106


>Glyma17g17050.1 
          Length = 251

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 64/108 (59%), Gaps = 3/108 (2%)

Query: 3   ATLQSLRPPFRFHXXXXXXXXXXXXXXXXXFSSSKLMRSKGSVFFTRKRTDASVVRASNS 62
           ATLQSLRP FR                     S K + SKG     R    +  V  SNS
Sbjct: 2   ATLQSLRPSFRPSIPSPNSHTFPATPFNY---SPKSIGSKGGSVTVRHSIVSPRVSVSNS 58

Query: 63  EYSPSITENLGDVSIFTAAGQPVMFKDLWDQNQGVAVVALLRHFGCPC 110
           EYS  I ENLGDV+IFTA G+PV F DLWDQ+QG+AVVALLRHFGCPC
Sbjct: 59  EYSTQIAENLGDVTIFTATGEPVRFSDLWDQSQGIAVVALLRHFGCPC 106


>Glyma17g17050.4 
          Length = 189

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 64/108 (59%), Gaps = 3/108 (2%)

Query: 3   ATLQSLRPPFRFHXXXXXXXXXXXXXXXXXFSSSKLMRSKGSVFFTRKRTDASVVRASNS 62
           ATLQSLRP FR                     S K + SKG     R    +  V  SNS
Sbjct: 2   ATLQSLRPSFRPSIPSPNSHTFPATPFNY---SPKSIGSKGGSVTVRHSIVSPRVSVSNS 58

Query: 63  EYSPSITENLGDVSIFTAAGQPVMFKDLWDQNQGVAVVALLRHFGCPC 110
           EYS  I ENLGDV+IFTA G+PV F DLWDQ+QG+AVVALLRHFGCPC
Sbjct: 59  EYSTQIAENLGDVTIFTATGEPVRFSDLWDQSQGIAVVALLRHFGCPC 106


>Glyma17g17050.2 
          Length = 197

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 3  ATLQSLRPPFRFHXXXXXXXXXXXXXXXXXFS-SSKLMRSKGSVFFTRKRTDASVVRASN 61
          ATLQSLRP FR                   F+ S K + SKG     R    +  V  SN
Sbjct: 2  ATLQSLRPSFR----PSIPSPNSHTFPATPFNYSPKSIGSKGGSVTVRHSIVSPRVSVSN 57

Query: 62 SEYSPSITENLGDVSIFTAAGQPVMFKDLWDQNQ 95
          SEYS  I ENLGDV+IFTA G+PV F DLWDQ+Q
Sbjct: 58 SEYSTQIAENLGDVTIFTATGEPVRFSDLWDQSQ 91