Miyakogusa Predicted Gene

Lj4g3v0685290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0685290.2 tr|A9SF97|A9SF97_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233181,49.54,3e-17,CYTOCHROME C OXIDASE POLYPEPTIDE
VIA,Cytochrome c oxidase, subunit VIa; COX6A,Cytochrome c oxidase,
,CUFF.48307.2
         (102 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g23220.1                                                       119   1e-27
Glyma17g16840.2                                                       117   3e-27
Glyma17g16840.1                                                       112   7e-26

>Glyma05g23220.1 
          Length = 102

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 1  MASALVRSXXXXXXXXXXXXXXXXXPKRNFSSSGGHDDAYETAKWEKITYLGIASCTALA 60
          MA++LVRS                 PKRNF+SSG HDDAYETAKWEKITYLGI SCT LA
Sbjct: 1  MATSLVRSGFLRSALRGSARGSQV-PKRNFASSGHHDDAYETAKWEKITYLGIVSCTGLA 59

Query: 61 AYCLSKGXXXXXXXXXXXXLHIRNKEFPWGPDGLFETKH 99
           Y LSKG            LHIRNKEFPWGPDGLFETKH
Sbjct: 60 VYNLSKGHPHFKEPPAYPYLHIRNKEFPWGPDGLFETKH 98


>Glyma17g16840.2 
          Length = 102

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 64/99 (64%), Gaps = 1/99 (1%)

Query: 1  MASALVRSXXXXXXXXXXXXXXXXXPKRNFSSSGGHDDAYETAKWEKITYLGIASCTALA 60
          MA++LVRS                 PKRNF+SSG HDDAYETAKWEKITYLGI  CT LA
Sbjct: 1  MATSLVRSGFLRSALRGRARSSQV-PKRNFASSGHHDDAYETAKWEKITYLGIVGCTGLA 59

Query: 61 AYCLSKGXXXXXXXXXXXXLHIRNKEFPWGPDGLFETKH 99
           Y LSKG            LHIRNKEFPWGPDGLFETKH
Sbjct: 60 VYNLSKGHPHFKEPPAYPYLHIRNKEFPWGPDGLFETKH 98


>Glyma17g16840.1 
          Length = 103

 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 1  MASALVRSXXXXXXXXXXXXXXXXXPKRNFSSSGGHDDAYETAKWEKITYLGIASCTALA 60
          MA++LVRS                 PKRNF+SSG HDDAYETAKWEKITYLGI  CT LA
Sbjct: 1  MATSLVRSGFLRSALRGRARSSQV-PKRNFASSGHHDDAYETAKWEKITYLGIVGCTGLA 59

Query: 61 AYCLSKGXXXXXXXXXXXXLHIRNKEFPW-GPDGLFETKH 99
           Y LSKG            LHIRNKEFPW GPDGLFETKH
Sbjct: 60 VYNLSKGHPHFKEPPAYPYLHIRNKEFPWAGPDGLFETKH 99