Miyakogusa Predicted Gene

Lj4g3v0668270.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0668270.1 tr|G7JHL2|G7JHL2_MEDTR
DNA-damage-repair/toleration protein DRT111 OS=Medicago truncatula
GN=MTR_4g0,83.08,0,glycine rich nucleic binding domain,G-patch domain;
RNA recognition motif,RNA recognition motif doma,CUFF.47854.1
         (380 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g02910.1                                                       307   1e-83
Glyma07g35050.1                                                       257   2e-68

>Glyma20g02910.1 
          Length = 392

 Score =  307 bits (787), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 211/397 (53%), Positives = 220/397 (55%), Gaps = 22/397 (5%)

Query: 1   MLGGLYGDLPPPSSAEED-KPTTNVWSSSTKMAPATLRKPA--FTPPHTIPRSQXXXXXX 57
           MLGGLYGDLPPPSSAEED KPT NVWSSSTKMAPATLRKPA  F PP T+ R+Q      
Sbjct: 1   MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRAQPKPRPT 60

Query: 58  XXXXXXXXXXXXXXX--XXXXXXXXXXGVQSTVMEEYDPARPN-------DXXXXXXXXX 108
                                      GVQSTV+EEYDP RPN       D         
Sbjct: 61  TTTIPKPILSSSPAPPPDDALLQPALVGVQSTVLEEYDPTRPNDYEDYRRDRKRKAREAE 120

Query: 109 XXXXXXXVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISGEEAWRRRAAMXXXX 168
                                                     N+SGEEAWRRRAAM    
Sbjct: 121 MLRELERRRHEEEEEEKEREKERERERERDHSNNNDSSSSRLNVSGEEAWRRRAAMSGAG 180

Query: 169 XXXXXXXXXXXXXXXXXXXXXXXXXXXXIGKSETGGLGVGAGGQMTAAQRMMAXXXXXXX 228
                                       IGKSETGGLGVGAGGQMTAAQRMMA       
Sbjct: 181 SGSGAVLVPRSPSPPPGNVDGFT-----IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEG 235

Query: 229 XXXXXXXXXITTPLMAKKTDRRAGVIVNASDNSKKVKSVN-----FNGVPTRVLLLRNMX 283
                    ITTPLMAKKTDRRAGVIVNASDN+    S       FNGVPTRVLLLRNM 
Sbjct: 236 QGLGKQEQGITTPLMAKKTDRRAGVIVNASDNNNSSSSKKVKSVNFNGVPTRVLLLRNMV 295

Query: 284 XXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALID 343
                           CAKYGTVTRVLIFEITEPNFPV EAVRIFVQFERSEETTKAL+D
Sbjct: 296 GPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVHEAVRIFVQFERSEETTKALVD 355

Query: 344 LDGRFFGGRVVRATFYDEDKFGKNELAPMPGEIPGFT 380
           LDGR+FGGRVVRA+FYDE+KF KNELAPMPGEIPGFT
Sbjct: 356 LDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGFT 392


>Glyma07g35050.1 
          Length = 384

 Score =  257 bits (656), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/187 (77%), Positives = 148/187 (79%), Gaps = 3/187 (1%)

Query: 197 IGKSETGGLGVGAGGQMTAAQRMMAXXXXXXXXXXXXXXXXITTPLMAKKTDRRAGVIVN 256
           IGKSETGGLGVGAGGQMTAAQRMMA                ITTPLMAKKTDRRAGVIVN
Sbjct: 198 IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVN 257

Query: 257 ASDN---SKKVKSVNFNGVPTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFE 313
           ASDN   SKKVKSVNFNGVPTRVLLLRNM                 CAKYG VTRVLIFE
Sbjct: 258 ASDNNSSSKKVKSVNFNGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGIVTRVLIFE 317

Query: 314 ITEPNFPVDEAVRIFVQFERSEETTKALIDLDGRFFGGRVVRATFYDEDKFGKNELAPMP 373
           ITEPNFPV EAVRIFVQFERSEETTKAL+DLDGR+FGGRVVRATFYDE+KF KNELAPMP
Sbjct: 318 ITEPNFPVHEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEEKFSKNELAPMP 377

Query: 374 GEIPGFT 380
           GEIPGFT
Sbjct: 378 GEIPGFT 384



 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 63/102 (61%), Gaps = 4/102 (3%)

Query: 1   MLGGLYGDLPPPSSAEED-KPTTNVWSSSTKMAPATLRKPA--FTPPHTIPRSQXXXXXX 57
           MLGGLYGDLPPPSSAEED KPT NVWSSSTKMAPATLRKPA  F PP T+ R+       
Sbjct: 1   MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRAH-PKPKP 59

Query: 58  XXXXXXXXXXXXXXXXXXXXXXXXXGVQSTVMEEYDPARPND 99
                                    GVQSTV+EEYDPARPND
Sbjct: 60  TAKPVLSSTTPALPPEDSPLQPALVGVQSTVLEEYDPARPND 101