Miyakogusa Predicted Gene

Lj4g3v0620050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0620050.1 89069_g.1
         (103 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g34540.1                                                        53   6e-08
Glyma05g26180.1                                                        51   3e-07
Glyma19g29500.1                                                        47   3e-06

>Glyma11g34540.1 
          Length = 184

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 15/102 (14%)

Query: 3   KWVGIYYVVSEAPCDQLIQFYNCTSGNTKSKRGLLSIWLAI-VWHIWIARNAKIFKEESS 61
           +W+G++  + + P    +  ++C+             WL   VW +W  RN  IF E+S 
Sbjct: 97  RWLGLFSAMHKKPIQHFM-IHDCS-------------WLGTTVWALWCHRNNLIFGEQSL 142

Query: 62  TCEEIFDQARVKAWHWLRARNRSFQHSLWEWFNEPLACLEDM 103
             + + +  + K+W WL +  ++F  S +EWF+ P++ L+ +
Sbjct: 143 DLDSVVETIKFKSWLWLESYVKAFHFSFFEWFSNPMSSLQSL 184


>Glyma05g26180.1 
          Length = 2340

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 2   LKWVGIYYVVSEAPCDQLIQFYNCTSGNTKSKRGLLSIWLAIVWHIWIARNAKIFKEESS 61
           L W+GI   + + P +  +Q  +  +G TKS R     W+A+ W IW  RN  +F+ + +
Sbjct: 438 LSWIGIATALPQHPAEHFMQHGHQVTGTTKSTR-WKCWWVAVTWTIWQQRNRIVFQNQEN 496

Query: 62  TCEEIFDQARVKAWHWLRARN-RSFQHSLWEWFNEPLACLEDM 103
              +IF    +  W  ++  N  S +H L    +E  AC  D+
Sbjct: 497 ASPDIFYVIIMTYWCRIQGENANSSRHLL---LDENSACANDL 536


>Glyma19g29500.1 
          Length = 1997

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 2    LKWVGIYYVVSEAPCDQLIQFYNCTSGNTKSKRGLLSIWLAIVWHIWIARNAKIFKEESS 61
            L+WV      S  P +  +QF    S    +KR    +W+A+ + IW  RNA+IFK +  
Sbjct: 1899 LRWVNRVGPFSLDPKNHFVQFTQWNSKAGTNKRWEF-LWIALSFSIWHHRNARIFKNQPF 1957

Query: 62   TCEEIFDQARVKAWHWLRARNRSFQ 86
            T E++ D A    W WL+   +  Q
Sbjct: 1958 TPEKVMDDALFHTWSWLKCVEKDSQ 1982