Miyakogusa Predicted Gene

Lj4g3v0506850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0506850.1 tr|I3NMM5|I3NMM5_HEVBR 50S ribosomal protein L33A
OS=Hevea brasiliensis GN=RPL33A PE=3 SV=1,81.03,1e-17,Zn-binding
ribosomal proteins,Ribosomal protein, zinc-binding domain; SUBFAMILY
NOT NAMED,NULL; FAMI,CUFF.47544.1
         (57 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g31050.1                                                       113   5e-26
Glyma14g15370.1                                                       113   5e-26
Glyma13g34940.1                                                        54   3e-08

>Glyma17g31050.1 
          Length = 57

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/57 (96%), Positives = 57/57 (100%)

Query: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKFDPRVNKHVLFTEAKMK 57
          MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRK+DPRVN+HVLFTEAKMK
Sbjct: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 57


>Glyma14g15370.1 
          Length = 57

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/57 (96%), Positives = 57/57 (100%)

Query: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKFDPRVNKHVLFTEAKMK 57
          MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRK+DPRVN+HVLFTEAKMK
Sbjct: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 57


>Glyma13g34940.1 
          Length = 46

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 11 FVKLVSAAGTGFFYVKRKPRQFTEKLEFRKFDPRVNKHVLFTEAK 55
           +++VS AGTGFFY  RK R+  +KLE +K+DP+V +HV+F E+K
Sbjct: 3  IIRVVSTAGTGFFYAMRKSRKM-DKLELKKYDPKVKRHVVFRESK 46