Miyakogusa Predicted Gene

Lj4g3v0496570.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0496570.2 Non Chatacterized Hit- tr|C0PEM8|C0PEM8_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,55,9e-17,seg,NULL;
coiled-coil,NULL,CUFF.47499.2
         (391 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g24030.1                                                       133   3e-31

>Glyma13g24030.1 
          Length = 490

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 89/122 (72%)

Query: 2   HPSSTVGTQSFSFGCNKNADIHLRSKTQARDSFRSNDTRSGNKMVSDSLPGPGKLMRDAP 61
            PSST+GT+  S G  KN DI L S TQAR++FRSNDT+ G K+V DSL    KLMR+A 
Sbjct: 299 QPSSTIGTKGSSLGNEKNIDILLGSITQARENFRSNDTKHGRKLVGDSLTDSSKLMRNAG 358

Query: 62  ALLGSKDDLASRSSTREGIVFDVTQSASKLAGNMKSFTEDVNRNKVKFQETNTSTKDVNI 121
            LLGSKDDL S S+TREGIV DV+  + KLAGN +SF ++VN++K  F E   ST+DV++
Sbjct: 359 VLLGSKDDLKSCSNTREGIVSDVSPCSGKLAGNKQSFFDEVNKSKTTFLEIGISTEDVSM 418

Query: 122 LS 123
           LS
Sbjct: 419 LS 420



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 38/47 (80%)

Query: 290 FLKYYSTSGVESPSEIKVTEVEIPASVLMEDNSSVEKAEAYMKELED 336
            L  +STSG++S   IKVTEVEI   +LMEDN++VEKAEAY+KELED
Sbjct: 429 LLYNHSTSGLKSSPVIKVTEVEIHDPLLMEDNNNVEKAEAYIKELED 475