Miyakogusa Predicted Gene
- Lj4g3v0473650.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0473650.1 tr|Q5QMQ5|Q5QMQ5_ORYSJ Homeobox transcription
factor-like OS=Oryza sativa subsp. japonica
GN=P0007F0,65.08,5e-17,seg,NULL; coiled-coil,NULL;
Homeodomain,Homeodomain; Homeodomain-like,Homeodomain-like;
Homeobox,Hom,NODE_60549_length_1598_cov_46.536922.path1.1
(428 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma13g24370.1 509 e-144
Glyma07g32180.1 448 e-126
Glyma13g30860.1 384 e-106
Glyma06g44290.1 167 3e-41
Glyma02g13500.1 77 4e-14
Glyma15g18530.1 75 1e-13
Glyma03g24810.1 74 3e-13
Glyma14g03850.1 74 5e-13
Glyma02g44910.1 73 6e-13
Glyma04g15260.1 72 1e-12
Glyma08g41330.1 71 2e-12
Glyma18g14910.1 70 3e-12
Glyma08g38930.1 55 1e-07
Glyma01g06400.1 52 9e-07
>Glyma13g24370.1
Length = 1793
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 265/401 (66%), Positives = 303/401 (75%), Gaps = 15/401 (3%)
Query: 1 MEGEAGSEGDSNRKRGSADDNSDENRNE----GSNSKIANSNDGQGKPKRQMKTPFQLET 56
ME EA SEG++N KRG DD+S+EN N GS+ KI N N+GQ KPKRQMKTPFQLET
Sbjct: 1 MESEACSEGENNLKRGGTDDDSNENNNNNNNNGSSGKIVNCNEGQSKPKRQMKTPFQLET 60
Query: 57 LEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEMALKKQPQKVEVEPLP 116
LEKAYA+D +PSE +RVELS+KLGL DRQLQMWFCHRRLKDKK++ KK P+KV EPLP
Sbjct: 61 LEKAYAVDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKPPRKVLAEPLP 120
Query: 117 DSPVDNLRLGPELXXXXXXXXXXXXXPFTRLEPRNGVSRGMPGYYESPQAVMERRAIACV 176
DSP D+ RLG EL P+ R+EP N G+PGYYESPQA +E RAIACV
Sbjct: 121 DSPRDDPRLGLELANEYGSGSGSGSSPYARVEPLNVAPLGVPGYYESPQAKLEHRAIACV 180
Query: 177 EAQLGEPLRDDGPTLGVEFDPLPPGAFGTPIAVTEHQKLPSPSYDSKIYGRHDVRTNKAM 236
EAQLGEPLR++GP LGVEFDPLPP AFG PIAVTE QKLPS +YDSKIY RHD RTNKAM
Sbjct: 181 EAQLGEPLRENGPILGVEFDPLPPDAFGAPIAVTEQQKLPSFAYDSKIYERHDARTNKAM 240
Query: 237 AKTF--------QSRSRPDAFGQFRQSHLHDLMEDPARNPSVAPVLEQLPRIHVTQGQSS 288
A+TF +S R DA GQF QSHLHDL+E RNP A E LPRIH T+G SS
Sbjct: 241 ARTFRDNQFLPNKSAIRSDASGQFSQSHLHDLVEGSVRNPPFAHGNEHLPRIHATKGHSS 300
Query: 289 RVRLSSQQDRQGSSFQSPPLPDDVNPLAELYTNITNGGMNSHFTDHQMVGPENAYALPSG 348
RVRL SQQD+Q +QSP DDV P E+Y NI N G NSHFTDHQ+VGPEN +AL SG
Sbjct: 301 RVRLLSQQDKQLIPYQSPSRDDDVAPQREMYPNIANVGKNSHFTDHQIVGPENLHALHSG 360
Query: 349 QLLHDNAVRIDRKRKSDDPRSAKDVEAHEIKIRKELEKQES 389
Q+LH+NA RI++KRKSDD A+DVEAHE+KIRKELEKQ++
Sbjct: 361 QVLHNNATRIEKKRKSDD---AQDVEAHEMKIRKELEKQDN 398
>Glyma07g32180.1
Length = 1755
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/401 (61%), Positives = 282/401 (70%), Gaps = 32/401 (7%)
Query: 1 MEGEAGSEGDSNRKRG---SADDNSDENRNEGSNSKIANSNDGQGKPKRQMKTPFQLETL 57
MEGE SEG++NRKRG + ++ N N GS+ KI NSN+GQ KPKRQMKTPFQLETL
Sbjct: 1 MEGEGCSEGENNRKRGGSDDDSNENNNNNNNGSSGKIVNSNEGQSKPKRQMKTPFQLETL 60
Query: 58 EKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEMALKKQPQKVEVEPLPD 117
EKAYA+D +PSE +RVELS+KLGL DRQLQMWFCHRRLKDKK++ KK P+KV EPLPD
Sbjct: 61 EKAYAVDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKPPRKVLAEPLPD 120
Query: 118 SPVDNLRLGPELXXXXXXXXXXXXXPFTRLEPRNGVSRGMPGYYESPQAVMERRAIACVE 177
SP D+ RL EL P+ R+EP N V R +PGYYESPQA +E RAIACVE
Sbjct: 121 SPRDDPRLSLELANEYGSGSGSGSSPYARVEPLNVVPRCVPGYYESPQAKLELRAIACVE 180
Query: 178 AQLGEPLRDDGPTLGVEFDPLPPGAFGTPI-AVTEHQKLPSPSYDSKIYGRHDVRTNKAM 236
AQLGEPLRDDGP LG+EFDPLPP AFG PI AVTE QKLPS +YDSKIY RHD RTNKA+
Sbjct: 181 AQLGEPLRDDGPILGLEFDPLPPDAFGAPIAAVTEQQKLPSFAYDSKIYERHDARTNKAL 240
Query: 237 AKTF--------QSRSRPDAFGQFRQSHLHDLMEDPARNPSVAPVLEQLPRIHVTQGQSS 288
A+TF +S R DA GQF QSHLHD +E RNP A E LPRIH T+G SS
Sbjct: 241 ARTFRDNQFLPNKSGIRSDASGQFSQSHLHDPIEGFVRNPPFAHGNEHLPRIHATKGHSS 300
Query: 289 RVRLSSQQDRQGSSFQSPPLPDDVNPLAELYTNITNGGMNSHFTDHQMVGPENAYALPSG 348
RVRL SQQD+Q +QSP DD P ELY NI N G NSH T
Sbjct: 301 RVRLLSQQDKQLIPYQSPSRDDDAAPQRELYPNIANAGKNSHST---------------- 344
Query: 349 QLLHDNAVRIDRKRKSDDPRSAKDVEAHEIKIRKELEKQES 389
+LH+NA I++KRKSDD A DVEAHE+KIRKELEKQ++
Sbjct: 345 -VLHNNATWIEKKRKSDD---AHDVEAHEMKIRKELEKQDN 381
>Glyma13g30860.1
Length = 1675
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/363 (58%), Positives = 253/363 (69%), Gaps = 21/363 (5%)
Query: 33 KIANSNDGQGKPKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCH 92
KI NS++G KPKRQMKTPFQLETLEKAYA++ +PSE +RVELS+KLGL DRQLQMWFCH
Sbjct: 31 KIGNSSEGLSKPKRQMKTPFQLETLEKAYAVENYPSETMRVELSEKLGLSDRQLQMWFCH 90
Query: 93 RRLKDKKEMALKKQPQKVEVEPLPDSPVDNLRLGPELXXXXXXXXXXXXXPFTRLEPRNG 152
RRLKDKKE+ KK P+K LPDSPV+ +LGPE+ PF R E RN
Sbjct: 91 RRLKDKKELPSKK-PRKAAA--LPDSPVEEPKLGPEVGVEYGSGSGSGSSPFARSELRNV 147
Query: 153 VSRGMPGYYESPQAVMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPPGAFGTPIAVTEH 212
V R GYYESPQ +ME RAIACVEAQLGEPLR+DGP LGVEFDPLPP AFG P+AVTE
Sbjct: 148 VPR---GYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAVTEQ 204
Query: 213 QKLPSPSYDSKIYGRHDVRTNKAMAKTF--------QSRSRPDAFGQFRQSHLHDLMEDP 264
QK PS +YDSKIY RHD R NKA+A+TF QS R D +GQ HLHD M+ P
Sbjct: 205 QKRPSLAYDSKIYERHDARANKAIARTFHEYPFLPNQSGIRSDVYGQLNLPHLHDPMDGP 264
Query: 265 ARNPSVAPV-LEQLPRIHVTQGQSSRVR-LSSQQDRQGSSFQSPPLPDDVNPLAELYTNI 322
R P P+ EQ PR+H Q SS VR LS QQD+ ++ SPP +DV P E +TNI
Sbjct: 265 TRTP--FPLGNEQQPRVHAPQSHSSHVRLLSQQQDKLVITYPSPPRDNDVAPKREPHTNI 322
Query: 323 TNGGMNSHFTDHQMVGPENAYALPSGQLLHDNAV-RIDRKRKSDDPRSAKDVEAHEIKIR 381
T+ GMNSH TDH +VG +N YAL GQ+ H++AV R++RKRKS R+ + E ++R
Sbjct: 323 TSTGMNSHLTDHPIVGQDNPYALAGGQVSHNDAVLRMERKRKS--LRNKITSDESEERMR 380
Query: 382 KEL 384
KE+
Sbjct: 381 KEM 383
>Glyma06g44290.1
Length = 1606
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 177/368 (48%), Gaps = 57/368 (15%)
Query: 39 DGQGKPKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDK 98
+G+ K KR+MKT QLE LEKAYA + +PSE +R ELS KL L DRQLQMWFCHRRLKD+
Sbjct: 15 EGENKSKRKMKTASQLEVLEKAYAAEAYPSEALRAELSVKLSLSDRQLQMWFCHRRLKDR 74
Query: 99 KEMALKKQPQKVEVEPLPDSPVDNLRLGPELXXXXXXXXXXXXXPFTRLEPRNGVSRGMP 158
L+ L +P LG + RG
Sbjct: 75 NAKKLQNDS------SLAGAPA---LLGHSIIWI----------------------RGKF 103
Query: 159 GYYESPQAVMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPPGAFGTPIAVTEHQKLPSP 218
YYE PQ + + +A VE QLGEP+R+DGP LG+EFD LPP AFG PIA E+ + S
Sbjct: 104 SYYEPPQNMDVLQVVAFVERQLGEPIREDGPILGMEFDSLPPDAFGAPIAFQENFQKRSE 163
Query: 219 SYDSKIYGRHDVRTNKAMAKTFQS-----RSRPDAFGQFRQS-HLHDLMEDP------AR 266
+ I+ +H ++ +Q R + + + S H L P +
Sbjct: 164 YFLKLIFSKHALKDVSRTLHEYQFIPEKPSVRNETYERVAPSIHYSSLDGIPHSRTLLSS 223
Query: 267 NPSVAPVLEQLPRIHVTQGQSSRVRLSSQQDRQGSSFQSPPLPDD----VNPLAELYTNI 322
S E P + QG + L S+Q RQ S +D NP ++ +I
Sbjct: 224 GRSFLNGNESAPYGYGIQGHLPGLNLLSRQGRQNHLLPSASGENDGIPRKNPFVDVTADI 283
Query: 323 TNGGMNSHFTDHQMVGPENAYALPS-GQLLH-DNAVRIDRKRKSDDPRSAKDVEAHEIKI 380
NG D + +PS G+++H + R+ RKRK+DD + +++EA E K
Sbjct: 284 HNGAHPITLIDSPL--------MPSDGRVIHVEELSRLQRKRKNDDTKMQQELEAQERKN 335
Query: 381 RKELEKQE 388
RKELEKQ+
Sbjct: 336 RKELEKQD 343
>Glyma02g13500.1
Length = 80
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%)
Query: 33 KIANSNDGQGKPKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDR 84
KI NS++ KPK QMK PFQLETLEKAYA++ +PSE +RVELS+KLGL DR
Sbjct: 29 KIGNSSECLSKPKHQMKMPFQLETLEKAYAIENYPSETMRVELSEKLGLSDR 80
>Glyma15g18530.1
Length = 46
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/46 (73%), Positives = 39/46 (84%)
Query: 48 MKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHR 93
MKTPFQLETLEKAYA++ + E +RVELS+KL L D QLQMWFCHR
Sbjct: 1 MKTPFQLETLEKAYAVENYSLETMRVELSEKLELSDWQLQMWFCHR 46
>Glyma03g24810.1
Length = 86
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 33 KIANSNDGQGKPKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQL 86
KI NS++ K KRQMKT FQLETLEKAYA++ +PS+ +RVEL +KLGL DRQL
Sbjct: 33 KIGNSSECLSKHKRQMKTLFQLETLEKAYAVENYPSKTMRVELLKKLGLSDRQL 86
>Glyma14g03850.1
Length = 527
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 45/57 (78%)
Query: 45 KRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEM 101
KR++KTP QL+ LE Y K+P+EE+++ L+++LGL ++Q+ WFCHRRLKDK+ M
Sbjct: 21 KRKLKTPAQLKALENFYNEHKYPTEEMKLVLAEELGLTEKQISGWFCHRRLKDKRLM 77
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 147 LEPRNGVSRGM-PGYYESPQAVMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPPGAFGT 205
L P+ V+ G P Y + +E AI V+ QLG +DGP LG+EFD LPPGAF
Sbjct: 192 LNPKGAVNMGHKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGIEFDLLPPGAFEC 251
Query: 206 PIA 208
A
Sbjct: 252 QTA 254
>Glyma02g44910.1
Length = 526
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 45/57 (78%)
Query: 45 KRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEM 101
KR++KTP QL+ LE Y K+P+EE+++ L+++LGL ++Q+ WFCHRRLKDK+ M
Sbjct: 21 KRKLKTPAQLKALEDFYNEHKYPTEEMKLVLAEELGLTEKQISGWFCHRRLKDKRLM 77
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 147 LEPRNGVSRGM-PGYYESPQAVMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPPGAFGT 205
L P+ V G P Y + +E AI V QLG +DGP LG+EFDPLPPGAF
Sbjct: 191 LNPKGAVKMGHKPSGYLKVKGEIEHAAITAVRKQLGRHYLEDGPLLGIEFDPLPPGAFEC 250
Query: 206 PIAVT 210
A T
Sbjct: 251 QTADT 255
>Glyma04g15260.1
Length = 121
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 45/57 (78%)
Query: 45 KRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEM 101
KR++KTP QL+ LE Y K+P+EE+++ L+++LGL ++Q+ WFCHRRLKDK+ M
Sbjct: 10 KRKLKTPAQLKALENFYNEHKYPTEEMKLVLAEELGLTEKQISGWFCHRRLKDKRLM 66
>Glyma08g41330.1
Length = 526
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 45 KRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEM 101
KR++KTP QL+ LE Y +K+P+EE++ EL+ +L L ++Q+ WFCHRRLKDKK +
Sbjct: 21 KRRLKTPAQLKALEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKML 77
>Glyma18g14910.1
Length = 527
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 45 KRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEM 101
KR++KTP QL+ LE Y +K+P+EE++ EL+ +L L ++Q+ WFCHRRLKDKK +
Sbjct: 21 KRRLKTPAQLKGLEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKML 77
>Glyma08g38930.1
Length = 230
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 32/37 (86%)
Query: 65 KFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEM 101
K+P+EE+++ L+++LGL ++Q+ WFCHRRLKDK+ M
Sbjct: 2 KYPTEEMKLVLAEELGLTEKQISGWFCHRRLKDKRLM 38
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 147 LEPRNGVSRGM-PGYYESPQAVMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPPGAFGT 205
L P+ ++ G P Y + +E AI V+ QLG +DGP LG+EFD LPPGAF
Sbjct: 125 LNPKGAINMGHKPSGYLKVKGEIEHAAITAVKKQLGRNYLEDGPLLGIEFDLLPPGAFEC 184
Query: 206 PIAVTEHQKLPSPSYDSKIY 225
A P+ DS +Y
Sbjct: 185 QTA--------DPANDSYLY 196
>Glyma01g06400.1
Length = 121
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 56 TLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEM 101
LE Y K+P+EE+++ L+++LGL ++Q+ WFCH+RLK K+ M
Sbjct: 3 ALEDFYNEHKYPTEEMKLVLAEELGLTEKQISGWFCHKRLKYKRLM 48