Miyakogusa Predicted Gene

Lj4g3v0472820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0472820.1 Non Chatacterized Hit- tr|I3SPP4|I3SPP4_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,76.92,6e-17,SBP,Transcription factor, SBP-box; seg,NULL; SBT
domain,Transcription factor, SBP-box; PROKAR_LIPOPR,gene.g52482.t1.1
         (171 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g08270.1                                                        75   3e-14
Glyma13g31090.1                                                        75   4e-14
Glyma13g24590.1                                                        69   3e-12
Glyma07g31880.2                                                        66   2e-11
Glyma07g31880.1                                                        66   2e-11
Glyma11g08910.1                                                        51   7e-07
Glyma20g00900.1                                                        49   3e-06
Glyma07g19770.1                                                        47   7e-06
Glyma03g27180.2                                                        47   8e-06
Glyma18g36960.1                                                        47   9e-06

>Glyma15g08270.1 
          Length = 138

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 48/77 (62%), Gaps = 6/77 (7%)

Query: 33  WYEGKRTLRYKXXXXXXXXXXXXX---XXXGRRKRVVTDLYSKRGSKGGSSVPPSCQVEN 89
           W EGKR++ YK                   GR+K+VV+   SKRGSK G SVPPSCQV+ 
Sbjct: 5   WSEGKRSMSYKEEDEYEEEEEEEVSEYRDDGRKKKVVS---SKRGSKAGGSVPPSCQVDG 61

Query: 90  CDADLSEAKQYHRRHKV 106
           C ADLSEAK YHRRHKV
Sbjct: 62  CSADLSEAKPYHRRHKV 78


>Glyma13g31090.1 
          Length = 138

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 6/77 (7%)

Query: 33  WYEGKRTLRYKXXXXXXXXXXXXXXX---XGRRKRVVTDLYSKRGSKGGSSVPPSCQVEN 89
           W EGKR++ YK                   G++KRVV++   KRGSK G SVPPSCQV+ 
Sbjct: 5   WSEGKRSMSYKEEDEYEEEEEEEVSEYGDDGKKKRVVSN---KRGSKAGGSVPPSCQVDG 61

Query: 90  CDADLSEAKQYHRRHKV 106
           C+ADLSEAK YHRRHKV
Sbjct: 62  CNADLSEAKPYHRRHKV 78


>Glyma13g24590.1 
          Length = 142

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 51/80 (63%), Gaps = 8/80 (10%)

Query: 35  EGKRTLRYKXXXXXXXXXXXXX-------XXXGRR-KRVVTDLYSKRGSKGGSSVPPSCQ 86
           EGKR +RYK                       GRR KRV+ DLY KRGSKGG S+ PSCQ
Sbjct: 7   EGKRVMRYKEEDDDNDDEEEEEVVSEMGFEEDGRRNKRVIRDLYGKRGSKGGGSITPSCQ 66

Query: 87  VENCDADLSEAKQYHRRHKV 106
           V+NCDADLSEAKQYHRRHKV
Sbjct: 67  VDNCDADLSEAKQYHRRHKV 86


>Glyma07g31880.2 
          Length = 113

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 46/81 (56%), Gaps = 8/81 (9%)

Query: 34  YEGKRTLRYKXXXXXXXXXXXXXXXX-------GRRKRVVTDLYSKRGSKGGSS-VPPSC 85
           YEGKR LRYK                        R KRV+ DL+ KR    G   +PPSC
Sbjct: 6   YEGKRVLRYKEEDENDDDEEEEEVSEVGFGADRRRNKRVMRDLHGKRSGSKGGGSMPPSC 65

Query: 86  QVENCDADLSEAKQYHRRHKV 106
           QV+NCDADLSEAKQYHRRHKV
Sbjct: 66  QVDNCDADLSEAKQYHRRHKV 86


>Glyma07g31880.1 
          Length = 146

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 46/81 (56%), Gaps = 8/81 (9%)

Query: 34  YEGKRTLRYKXXXXXXXXXXXXX-------XXXGRRKRVVTDLYSKRGSKGGSS-VPPSC 85
           YEGKR LRYK                        R KRV+ DL+ KR    G   +PPSC
Sbjct: 6   YEGKRVLRYKEEDENDDDEEEEEVSEVGFGADRRRNKRVMRDLHGKRSGSKGGGSMPPSC 65

Query: 86  QVENCDADLSEAKQYHRRHKV 106
           QV+NCDADLSEAKQYHRRHKV
Sbjct: 66  QVDNCDADLSEAKQYHRRHKV 86


>Glyma11g08910.1 
          Length = 157

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 85  CQVENCDADLSEAKQYHRRHKVFPRGFYPSKVLMRPVLE------DSMSYQNLMTLKGVV 138
           CQ + C  +LS AK Y+RRHKV  R      VL+  + +       SM+ Q+LMT K V 
Sbjct: 45  CQADECGVNLSMAKSYNRRHKVCERHAKAPVVLVSSIRQRFCQQCSSMNLQSLMTPKEVA 104

Query: 139 GGVWLGIMRGVA 150
           G  W GIM  V 
Sbjct: 105 GKHWQGIMSEVV 116


>Glyma20g00900.1 
          Length = 1009

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 60  GRRKRVVTDLYSKRGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKVFPRGFYPSKVLM 118
           GR     ++   + GS G SS P  CQV+NC  DLS+AK YHRRHKV       SK L+
Sbjct: 70  GRTNNSNSNKRVRSGSPGTSSYP-MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALL 127


>Glyma07g19770.1 
          Length = 1019

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 72  KRGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKVFPRGFYPSKVLM 118
           + GS G +S P  CQV+NC  DLS+AK YHRRHKV       SK L+
Sbjct: 91  RSGSPGTASYP-MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALL 136


>Glyma03g27180.2 
          Length = 311

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 22/29 (75%)

Query: 78  GSSVPPSCQVENCDADLSEAKQYHRRHKV 106
            SS  P CQ E C+ADLS+AK YHRRHKV
Sbjct: 190 ASSNSPRCQAEGCNADLSQAKHYHRRHKV 218


>Glyma18g36960.1 
          Length = 350

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 61  RRKRVVTDL--YSKRGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKV 106
           +  RVV+     SK+G +GGS  PP CQVE C  DLS AK Y+ RHKV
Sbjct: 40  KTSRVVSSPSSASKKG-RGGSLQPPRCQVEGCKVDLSGAKAYYSRHKV 86