Miyakogusa Predicted Gene

Lj4g3v0462750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0462750.1 tr|I3S397|I3S397_LOTJA 40S ribosomal protein S6
OS=Lotus japonicus PE=2 SV=1,98.47,0,Ribosomal_S6e,Ribosomal protein
S6e; seg,NULL; 40S RIBOSOMAL PROTEIN S6,Ribosomal protein S6e;
RIBOS,CUFF.47375.1
         (197 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g31130.1                                                       359   e-100
Glyma15g08210.1                                                       358   3e-99
Glyma07g31840.1                                                       355   1e-98
Glyma08g45770.1                                                       355   2e-98
Glyma13g24630.1                                                       353   5e-98
Glyma18g26190.1                                                       346   8e-96
Glyma07g31840.2                                                       302   2e-82
Glyma16g09330.1                                                       290   7e-79
Glyma02g34720.1                                                       241   5e-64
Glyma07g31840.3                                                       224   4e-59
Glyma09g17280.1                                                        54   1e-07
Glyma04g15840.1                                                        52   3e-07
Glyma02g30700.1                                                        52   4e-07

>Glyma13g31130.1 
          Length = 267

 Score =  359 bits (922), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/197 (89%), Positives = 179/197 (90%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEV+GDALGEEFKGYVFKITGGCDKQG
Sbjct: 19  MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQG 78

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 79  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 138

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           NDLPGLTDVEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR FTTKNGKKVSKAPKI
Sbjct: 139 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKI 198

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 199 QRLVTPLTLQRKRARIA 215


>Glyma15g08210.1 
          Length = 249

 Score =  358 bits (918), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 175/197 (88%), Positives = 179/197 (90%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEV+GDALGEEFKGYVFKITGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           +DLPGLTDVEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR FTTKNGKKVSKAPKI
Sbjct: 121 SDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 181 QRLVTPLTLQRKRARIA 197


>Glyma07g31840.1 
          Length = 249

 Score =  355 bits (912), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 175/197 (88%), Positives = 178/197 (90%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           +DLPGLTDVEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR FTTK GKKVSKAPKI
Sbjct: 121 SDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 181 QRLVTPLTLQRKRARIA 197


>Glyma08g45770.1 
          Length = 248

 Score =  355 bits (910), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 175/197 (88%), Positives = 178/197 (90%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEV+GDALGEEFKGYVFKITGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVIGDALGEEFKGYVFKITGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           NDLPGLTDVEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR FTTK GKKVSKAPKI
Sbjct: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 181 QRLVTPLTLQRKRARIA 197


>Glyma13g24630.1 
          Length = 249

 Score =  353 bits (907), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 174/197 (88%), Positives = 177/197 (89%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 180
           +DLPGLTDVEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR F TK GKKVSKAPKI
Sbjct: 121 SDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFITKAGKKVSKAPKI 180

Query: 181 QRLVTPLTLQRKRARIA 197
           QRLVTPLTLQRKRARIA
Sbjct: 181 QRLVTPLTLQRKRARIA 197


>Glyma18g26190.1 
          Length = 245

 Score =  346 bits (888), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 170/195 (87%), Positives = 173/195 (88%)

Query: 3   FNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFP 62
           FNIA+PTTGCQKKLEIDDD KLRAFWDKRISQEV GDALGEEFKGYVFKITGGCDKQGFP
Sbjct: 1   FNIASPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFP 60

Query: 63  MKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGDND 122
           MKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+ND
Sbjct: 61  MKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGEND 120

Query: 123 LPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKIQR 182
           LPGLTD EKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR FTTK GKKVSKAPKIQR
Sbjct: 121 LPGLTDAEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQR 180

Query: 183 LVTPLTLQRKRARIA 197
           LVTPLTLQRKRARIA
Sbjct: 181 LVTPLTLQRKRARIA 195


>Glyma07g31840.2 
          Length = 188

 Score =  302 bits (773), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/172 (87%), Positives = 153/172 (88%)

Query: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60
           MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 60

Query: 61  FPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGD 120
           FPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGK 172
           +DLPGLTDVEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR FTTK GK
Sbjct: 121 SDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGK 172


>Glyma16g09330.1 
          Length = 225

 Score =  290 bits (742), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 146/173 (84%), Positives = 149/173 (86%)

Query: 25  RAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF 84
           RAFWDKRISQEV  DALGEEFKGYVFKITGGCDKQGFPMKQGVLTPG V LLLHRGTPCF
Sbjct: 1   RAFWDKRISQEVNIDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGCVHLLLHRGTPCF 60

Query: 85  XXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIR 144
                            CIVSPDLSVLNLVIVKKG++DLP LTDVEKPRMRGPKRASKIR
Sbjct: 61  RGYGRRNGERRRKFVRGCIVSPDLSVLNLVIVKKGESDLPRLTDVEKPRMRGPKRASKIR 120

Query: 145 KLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIA 197
           KLFNLSK+DDVRKYVNTYRR FTTK GKKVSKAPKIQRLVTPLTLQRKRARIA
Sbjct: 121 KLFNLSKEDDVRKYVNTYRRTFTTKVGKKVSKAPKIQRLVTPLTLQRKRARIA 173


>Glyma02g34720.1 
          Length = 145

 Score =  241 bits (614), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 121/146 (82%), Positives = 126/146 (86%), Gaps = 1/146 (0%)

Query: 27  FWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXX 86
           FW+KRISQEV+GDALGEEFKGYVF ITGGCDKQGFP+KQGVLTPGRVRLLLHRGTPCF  
Sbjct: 1   FWNKRISQEVVGDALGEEFKGYVFIITGGCDKQGFPIKQGVLTPGRVRLLLHRGTPCFRG 60

Query: 87  XXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKL 146
                          CIVSPDLSVLNLVIVKKG++DLPGLTDVEKPRMRGPKRASKIRKL
Sbjct: 61  YGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKL 120

Query: 147 FNLSKDDDVRKYVNTYRRNFTTKNGK 172
           FNLSK DDVRKYVNTYRR FTTKNGK
Sbjct: 121 FNLSK-DDVRKYVNTYRRTFTTKNGK 145


>Glyma07g31840.3 
          Length = 187

 Score =  224 bits (572), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 113/135 (83%), Positives = 116/135 (85%)

Query: 63  MKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGDND 122
           MKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG++D
Sbjct: 1   MKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESD 60

Query: 123 LPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKIQR 182
           LPGLTDVEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR FTTK GKKVSKAPKIQR
Sbjct: 61  LPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQR 120

Query: 183 LVTPLTLQRKRARIA 197
           LVTPLTLQRKRARIA
Sbjct: 121 LVTPLTLQRKRARIA 135


>Glyma09g17280.1 
          Length = 144

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 26/27 (96%)

Query: 171 GKKVSKAPKIQRLVTPLTLQRKRARIA 197
           GKKVSKAPKIQRLVTPLTLQR RARIA
Sbjct: 51  GKKVSKAPKIQRLVTPLTLQRNRARIA 77


>Glyma04g15840.1 
          Length = 97

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 26/27 (96%)

Query: 171 GKKVSKAPKIQRLVTPLTLQRKRARIA 197
           GKKVSKAPKIQRLVTPLTLQR RARIA
Sbjct: 16  GKKVSKAPKIQRLVTPLTLQRNRARIA 42


>Glyma02g30700.1 
          Length = 41

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 171 GKKVSKAPKIQRLVTPLTLQRKRARIA 197
           GKKVSKAPKIQ+LVTPLTLQRKRARIA
Sbjct: 1   GKKVSKAPKIQQLVTPLTLQRKRARIA 27