Miyakogusa Predicted Gene
- Lj4g3v0451190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0451190.1 Non Chatacterized Hit- tr|A9NTQ6|A9NTQ6_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,46.46,1e-18,LSD1: zinc finger domain, LSD1 subclass,Zinc finger,
LSD1-type; seg,NULL; FAMILY NOT NAMED,NULL; zf-,CUFF.47264.1
(141 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma07g31600.1 199 9e-52
Glyma17g16600.4 94 3e-20
Glyma05g23710.1 94 3e-20
Glyma17g16600.3 94 5e-20
Glyma05g30490.1 92 1e-19
Glyma08g13630.1 92 1e-19
Glyma15g22140.2 92 2e-19
Glyma15g22140.1 91 3e-19
Glyma05g30490.2 91 3e-19
Glyma01g40720.1 91 4e-19
Glyma09g10010.1 89 2e-18
Glyma17g16600.1 88 3e-18
Glyma05g30490.3 86 1e-17
Glyma08g13630.2 86 1e-17
Glyma17g16600.2 53 1e-07
Glyma05g23710.2 52 2e-07
>Glyma07g31600.1
Length = 128
Score = 199 bits (505), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 107/141 (75%), Positives = 113/141 (80%), Gaps = 13/141 (9%)
Query: 1 MQSHEAEKQEDGDGPPPGWQXXXXXXXXXXXXXWQTILTPPPSRPSGLAQMVCGSCRRLL 60
MQS + K+ED +GPPPGWQ PPP RPSG AQMVCGSCRRLL
Sbjct: 1 MQSQQTVKEEDDEGPPPGWQP-------------LPAQPPPPPRPSGWAQMVCGSCRRLL 47
Query: 61 SYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLMYPYGASQVRCSACRFVTEIGE 120
SYPRGAKHVKCSCCQTVNIVLEADQVGQVKC SCAVLLMYPYGASQVRCS+CRFVTEIG
Sbjct: 48 SYPRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCRFVTEIGA 107
Query: 121 HNKRPPWSVQQRKPTPAQTGC 141
HNKRPPWSVQQRKP+P +TGC
Sbjct: 108 HNKRPPWSVQQRKPSPPKTGC 128
>Glyma17g16600.4
Length = 145
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
PPP +AQ+VCG C LL Y RGA V+CSCC TVN+ LEA+QV V C +C +LL
Sbjct: 56 PPPGTE--MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLA 113
Query: 100 YPYGASQVRCSACRFVTEIG 119
Y YGA V+C+ C FVT +G
Sbjct: 114 YQYGARSVKCAVCNFVTSVG 133
>Glyma05g23710.1
Length = 145
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
PPP +AQ+VCG C LL Y RGA V+CSCC TVN+ LEA+QV V C +C +LL
Sbjct: 56 PPPGTE--MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLA 113
Query: 100 YPYGASQVRCSACRFVTEIG 119
Y YGA V+C+ C FVT +G
Sbjct: 114 YQYGARSVKCAVCNFVTSVG 133
>Glyma17g16600.3
Length = 150
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 39 TPPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLL 98
PPP +AQ+VCG C LL Y RGA V+CSCC TVN+ LEA+QV V C +C +LL
Sbjct: 55 VPPPGTE--MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLL 112
Query: 99 MYPYGASQVRCSACRFVTEIG 119
Y YGA V+C+ C FVT +G
Sbjct: 113 AYQYGARSVKCAVCNFVTSVG 133
>Glyma05g30490.1
Length = 177
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEA-DQVGQVKCASCAVLL 98
PPP ++Q+ CG CR LL Y RGA V+CSCC TVN+V A +QV V C +C L
Sbjct: 35 PPPGME--MSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPPASNQVAHVHCGNCRTTL 92
Query: 99 MYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQ 131
MYPYGA V+C+ C F+T + +N R P V +
Sbjct: 93 MYPYGAPSVKCALCHFITNVSTNNGRLPIPVHR 125
>Glyma08g13630.1
Length = 177
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEA-DQVGQVKCASCAVLL 98
PPP ++Q+ CG CR LL Y RGA V+CSCC TVN+V A +QV V C +C L
Sbjct: 35 PPPGME--MSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPPASNQVAHVHCGNCRTTL 92
Query: 99 MYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQ 131
MYPYGA V+C+ C F+T + +N R P V +
Sbjct: 93 MYPYGAPSVKCALCHFITNVSTNNGRLPIPVHR 125
>Glyma15g22140.2
Length = 176
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 61/94 (64%), Gaps = 6/94 (6%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV--LEADQVGQVKCASCAVL 97
PPP ++Q+ CG C LL Y RGA V+CSCC T+N+V LE++QV + C +C
Sbjct: 35 PPPGM--DMSQLYCGGCTTLLMYTRGATSVRCSCCHTINLVPVLESNQV--IHCTNCRTT 90
Query: 98 LMYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQ 131
LMYPYGAS V+C+ CR++T + N R P VQ+
Sbjct: 91 LMYPYGASSVKCAICRYITNVSMTNGRLPIPVQR 124
>Glyma15g22140.1
Length = 180
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 61/94 (64%), Gaps = 6/94 (6%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV--LEADQVGQVKCASCAVL 97
PPP ++Q+ CG C LL Y RGA V+CSCC T+N+V LE++QV + C +C
Sbjct: 35 PPPGM--DMSQLYCGGCTTLLMYTRGATSVRCSCCHTINLVPVLESNQV--IHCTNCRTT 90
Query: 98 LMYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQ 131
LMYPYGAS V+C+ CR++T + N R P VQ+
Sbjct: 91 LMYPYGASSVKCAICRYITNVSMTNGRLPIPVQR 124
>Glyma05g30490.2
Length = 147
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEA-DQVGQVKCASCAVLL 98
PPP ++Q+ CG CR LL Y RGA V+CSCC TVN+V A +QV V C +C L
Sbjct: 35 PPPGME--MSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPPASNQVAHVHCGNCRTTL 92
Query: 99 MYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQ 131
MYPYGA V+C+ C F+T + +N R P V +
Sbjct: 93 MYPYGAPSVKCALCHFITNVSTNNGRLPIPVHR 125
>Glyma01g40720.1
Length = 147
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
PPP +AQ+VCG C L Y RGA V+CSCC TVN+ LEA+ V V C +C +LL
Sbjct: 58 PPPGTE--MAQLVCGGCHTFLMYIRGATSVQCSCCHTVNLALEANLVAHVNCGNCKMLLR 115
Query: 100 YPYGASQVRCSACRFVTEIG 119
Y YGA V+C+ C FVT +G
Sbjct: 116 YQYGARSVKCAVCSFVTSVG 135
>Glyma09g10010.1
Length = 174
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLM 99
PPP ++Q+ CG C LL Y RGA V+CSCC T+N+V E++QV + CA+C LM
Sbjct: 35 PPPGM--DMSQLYCGGCTTLLMYTRGATSVRCSCCHTINLVPESNQV--IHCANCRTTLM 90
Query: 100 YPYGASQVRCSACRFVTEIGEHNKRPPWSVQQ 131
YPYGAS V+C+ C ++T I N R VQ+
Sbjct: 91 YPYGASSVKCAICCYITNISMTNGRLSIPVQR 122
>Glyma17g16600.1
Length = 150
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 39 TPPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLL 98
PPP +AQ+VCG C LL Y RGA V+CSCC TVN+ LE V V C +C +LL
Sbjct: 55 VPPPGTE--MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGIVVAHVNCGNCRMLL 112
Query: 99 MYPYGASQVRCSACRFVTEIG 119
Y YGA V+C+ C FVT +G
Sbjct: 113 AYQYGARSVKCAVCNFVTSVG 133
>Glyma05g30490.3
Length = 175
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEA-DQVGQVKCASCAVLL 98
PPP ++Q+ CG CR LL Y RGA V+CSCC TVN+V A +QV V C +C L
Sbjct: 35 PPPGME--MSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPPASNQVAHVHCGNCRTTL 92
Query: 99 MYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQ 131
MYPYGA V+C+ C F+T +N R P V +
Sbjct: 93 MYPYGAPSVKCALCHFITN--TNNGRLPIPVHR 123
>Glyma08g13630.2
Length = 175
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 40 PPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEA-DQVGQVKCASCAVLL 98
PPP ++Q+ CG CR LL Y RGA V+CSCC TVN+V A +QV V C +C L
Sbjct: 35 PPPGME--MSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPPASNQVAHVHCGNCRTTL 92
Query: 99 MYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQ 131
MYPYGA V+C+ C F+T +N R P V +
Sbjct: 93 MYPYGAPSVKCALCHFITN--TNNGRLPIPVHR 123
>Glyma17g16600.2
Length = 106
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 49 AQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV-LEADQVGQVKCASCAVLLMYPYGASQV 107
+Q+VC CR LL +P GA V C+ C V V ++ Q+ C C LLMY GA+ V
Sbjct: 24 SQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
Query: 108 RCSACRFV 115
+CS C V
Sbjct: 84 QCSCCHTV 91
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 TPPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQV 86
PPP + +AQ+VCG C LL Y RGA V+CSCC TVN+ LE V
Sbjct: 55 VPPPG--TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGIVV 100
>Glyma05g23710.2
Length = 123
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 39 TPPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLE 82
PPP + +AQ+VCG C LL Y RGA V+CSCC TVN+ LE
Sbjct: 55 VPPPG--TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE 96
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 49 AQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV-LEADQVGQVKCASCAVLLMYPYGASQV 107
+Q+VC CR LL +P GA V C+ C V V ++ Q+ C C LLMY GA+ V
Sbjct: 24 SQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
Query: 108 RCSACRFV 115
+CS C V
Sbjct: 84 QCSCCHTV 91