Miyakogusa Predicted Gene
- Lj4g3v0451060.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0451060.1 Non Chatacterized Hit- tr|B8A6M6|B8A6M6_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,47.25,3e-18,HLH, helix-loop-helix DNA-binding
domain,Helix-loop-helix domain; HLH,Helix-loop-helix domain; no
de,CUFF.47251.1
(392 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma05g26490.1 417 e-117
Glyma08g09420.1 389 e-108
Glyma08g36320.1 111 1e-24
Glyma16g12110.1 104 2e-22
Glyma16g05390.1 53 5e-07
Glyma16g05390.2 53 5e-07
Glyma19g27480.1 53 5e-07
Glyma02g16670.1 53 6e-07
Glyma06g17330.1 52 1e-06
Glyma04g37750.1 52 1e-06
Glyma05g38530.1 52 2e-06
Glyma14g36370.1 51 2e-06
Glyma08g01110.1 51 2e-06
Glyma16g26290.1 50 4e-06
>Glyma05g26490.1
Length = 471
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/421 (59%), Positives = 272/421 (64%), Gaps = 54/421 (12%)
Query: 1 MDNSYXXXXXXMDTNLVQDVIDDLPYQQSMWDPNVQEFQNMNYANHLEHQPHEQQFH--- 57
M NSY MD +LVQ +E Q++ YANH E Q +QQ
Sbjct: 76 MGNSYINNNNNMDNHLVQ-----------------EELQDIAYANHTEQQQQQQQNEQQF 118
Query: 58 -----QIEAQSYN-PSSIMDPPYPAIDL----HLPTCSASSLLTTP-----------PNF 96
Q +QSYN PSSI+DPPYP+ DL H+P CSASSLLT P PNF
Sbjct: 119 QQIETQNCSQSYNNPSSILDPPYPSPDLLNLLHMPRCSASSLLTNPSICLTNPTQNTPNF 178
Query: 97 HNSMGFLGDLPIGSDNTSAASSVLCDPLFHLNQVPPPPTAFRELFQSLPRGYSFPMSSQN 156
N M FLGDL IGS+NTSA SSVL DPLFHLN +PP P A RELFQSLPRGYS P +S+N
Sbjct: 179 QNPMAFLGDLTIGSENTSA-SSVLYDPLFHLN-LPPQPPALRELFQSLPRGYSLPTNSRN 236
Query: 157 XXXXXXXXXXXXXXXXXQLDMGVLEFNTINRVTASVXXXXXXXXXX-----XXXXXQLNG 211
QLDMGVLEFN RVT SV QLNG
Sbjct: 237 GSLFAGGDEMEGDGS--QLDMGVLEFN---RVTPSVGKGRGGKATKHFATEKQRREQLNG 291
Query: 212 KYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELKILVXXXXXXXXXXXXXXTEDD 271
KYKILR+LIPSPTKIDRASVVGDAIDYIRELIRT+NELK+LV TE+D
Sbjct: 292 KYKILRNLIPSPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYAKERYKRPKTEED 351
Query: 272 GAESCNIKPFGDPDGHIRTSWLQRKSKDSEXXXXXXXXXXXXKLSQRKKINCLLFASKVL 331
AESCNIKPFGDPDG IRTSWLQRKSKDSE KL QRKKINCLLF SKVL
Sbjct: 352 AAESCNIKPFGDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVL 411
Query: 332 DELQLEIHHVAGGHVGEYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAAAVPHSSS 391
DELQLE+HHVAGGHVGEYCSFL NSK +EGSSVYASAIANR+IDVLD+Q Y AAVPH++S
Sbjct: 412 DELQLELHHVAGGHVGEYCSFLFNSKIMEGSSVYASAIANRVIDVLDSQ-YTAAVPHTNS 470
Query: 392 Y 392
Y
Sbjct: 471 Y 471
>Glyma08g09420.1
Length = 452
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 223/378 (58%), Positives = 242/378 (64%), Gaps = 44/378 (11%)
Query: 1 MDNSYXXXXXXMDTNLVQDVIDDLPYQQSMWDPNVQEFQNMNYANHLEHQPHEQQFHQIE 60
M NSY MD +LVQ+VID PYQQS WDP +Q F+ N +
Sbjct: 98 MGNSYINNNNNMDNHLVQEVIDAFPYQQSTWDPTIQ-FETQNCS---------------- 140
Query: 61 AQSYN-PSSIMDPPYPAIDL----HLPTCSASSLLTTP-----------PNFHNSMGFLG 104
QSYN PSSI+DPPYP+ DL H+P CSASSLLT P PNF N M FLG
Sbjct: 141 -QSYNNPSSILDPPYPSPDLLNLLHMPRCSASSLLTNPSICLTNPTQNTPNFQNPMAFLG 199
Query: 105 DLPIGSDNTSAASSVLCDPLFHLNQVPPPPTAFRELFQSLPRGYSFPMSSQNXXXXXXXX 164
DLPIGS+NTSA SSVL DPLFHLN +PP P A RELFQSLPRGYS P +S+N
Sbjct: 200 DLPIGSENTSA-SSVLYDPLFHLN-LPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGGD 257
Query: 165 XXXXXXXXXQLDMGVLEFNTINRVTASVXXXXXXXXXX-----XXXXXQLNGKYKILRSL 219
QLDMGVLEFN + +T SV QLNGKYKILR+L
Sbjct: 258 EMEGDGS--QLDMGVLEFNRVT-LTPSVGKGRRGKATKHFATEKQRREQLNGKYKILRNL 314
Query: 220 IPSPTKIDRASVVGDAIDYIRELIRTLNELKILVXXXXXXXXXXXXXXTEDDGAESCNIK 279
IPSPTK DRASVVGDAIDYIRELIRT+NELK+LV TE+D AESCNIK
Sbjct: 315 IPSPTKTDRASVVGDAIDYIRELIRTVNELKLLVEKKRYAKDRCKRPKTEEDAAESCNIK 374
Query: 280 PFGDPDGHIRTSWLQRKSKDSEXXXXXXXXXXXXKLSQRKKINCLLFASKVLDELQLEIH 339
PFGDPDG IRTSWLQRKSKDSE KL QRKKINCLLF SKVLDELQLE+H
Sbjct: 375 PFGDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELH 434
Query: 340 HVAGGHVGEYCSFLLNSK 357
HVAGGHVGEYCSFL NSK
Sbjct: 435 HVAGGHVGEYCSFLFNSK 452
>Glyma08g36320.1
Length = 357
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 42/288 (14%)
Query: 107 PIGSDNTSAASSVLCDPLFHLN--QVPPPPTAFRELFQSLPR-GYSFPMSSQNXXXXXXX 163
PI DN++ SSV DP HLN Q PT R+L +P FP +
Sbjct: 103 PIPGDNSTNVSSVSYDPYLHLNLQQQQQQPT-LRDLLPHMPALSNDFPFAGH-------- 153
Query: 164 XXXXXXXXXXQLDMGVLEF--NTINRVTASVXXXXXXXXXXXXXXXQLNGKYKILRSLIP 221
GV++F + + L+ K+ L+ LIP
Sbjct: 154 --AVEGEGIQGFGNGVVDFTQDVGKKRGGKRTKQFTSTITEKQRRVDLSSKFDALKELIP 211
Query: 222 SPTKIDRASVVGDAIDYIRELIRTLNELKILVXXXXXXXXXXXXXXTEDDGAESCNIKPF 281
+P+K +I ++ + ++++ + A+ +
Sbjct: 212 NPSK-----------KWIEYQLKRHDIQRVMMRRR------------HEGEADEGDFSTL 248
Query: 282 GDPDGH---IRTSWLQRKSKDSEXXXXXXXXXXXXKLSQRKKINCLLFASKVLDELQLEI 338
+PD + +R+SW++RKSKD+E KL QRKKI+CL+ S +LD+L L++
Sbjct: 249 QEPDQYSENLRSSWIRRKSKDTEVDVRIVDNEVTIKLVQRKKIDCLVHVSHLLDQLNLDL 308
Query: 339 HHVAGGHVGEYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAAAV 386
HVAGGH+G++CS+L N+K EGSS+YASAIA+++I V+DT + AA++
Sbjct: 309 QHVAGGHIGDFCSYLFNTKICEGSSLYASAIAHKLIQVMDTSFAAASL 356
>Glyma16g12110.1
Length = 317
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 95/222 (42%), Gaps = 16/222 (7%)
Query: 107 PIGSDNTSAASSVLCDPLFHLNQVPPPPTAFRELFQSLPR-GYSFPMSSQNXXXXXXXXX 165
PI DN + SSV DP HLN REL +P FP
Sbjct: 108 PIPGDNRTNVSSVSYDPYLHLNLQQQQQPTLRELLPHMPALRNDFPFGG----------- 156
Query: 166 XXXXXXXXQLDMGVLEFN---TINRVTASVXXXXXXXXXXXXXXXQLNGKYKILRSLIPS 222
G+++F R L+ K+ L+ LIP+
Sbjct: 157 AAGGDDIQDFGNGLVDFTQQEVGKRRGGKRTKQFTSTTTERQRRVDLSSKFDALKELIPN 216
Query: 223 PTKIDRASVVGDAIDYIRELIRTLNELKILVXXXXXXXXXXXXXXTEDDGAESCNIKPFG 282
P+K DRASVVGDAI+YIREL RT+ ELK+LV + ES N+ P
Sbjct: 217 PSKSDRASVVGDAINYIRELKRTVEELKLLVEKKRLEKQRVMMRHKVETEGESSNLDP-A 275
Query: 283 DPDGHIRTSWLQRKSKDSEXXXXXXXXXXXXKLSQRKKINCL 324
+ +R+SW+QRK+KD+E KL QRKKI+CL
Sbjct: 276 EYSESLRSSWIQRKTKDTEVDVRIVDNEVTIKLVQRKKIDCL 317
>Glyma16g05390.1
Length = 450
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 36/42 (85%)
Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
+LN + +LRS++P +K+DRAS++GDAIDY++EL++ +N+L
Sbjct: 273 KLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 314
>Glyma16g05390.2
Length = 424
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 36/42 (85%)
Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
+LN + +LRS++P +K+DRAS++GDAIDY++EL++ +N+L
Sbjct: 273 KLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 314
>Glyma19g27480.1
Length = 187
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 36/42 (85%)
Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
+LN + +LRS++P +K+DRAS++GDAIDY++EL++ +N+L
Sbjct: 9 KLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 50
>Glyma02g16670.1
Length = 571
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELK 250
+LN ++ ILRSL+P TK+D+AS++GD I+Y+++L R + EL+
Sbjct: 389 KLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELE 431
>Glyma06g17330.1
Length = 426
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 36/42 (85%)
Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
+LN + +LRS++P +K+DRAS++GDAI+Y++EL++ +N+L
Sbjct: 250 KLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDL 291
>Glyma04g37750.1
Length = 455
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 36/42 (85%)
Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
+LN + +LRS++P +K+DRAS++GDAI+Y++EL++ +N+L
Sbjct: 279 KLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDL 320
>Glyma05g38530.1
Length = 391
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 37/42 (88%)
Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
+LN + +LRS++P+ +K+DRAS++GDAI+Y++EL++ ++EL
Sbjct: 216 KLNDRLYMLRSVVPNISKMDRASILGDAIEYLKELLQRISEL 257
>Glyma14g36370.1
Length = 336
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 209 LNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELK 250
LN + +LRS++P +K+DR +++GD IDY++EL+ +N LK
Sbjct: 183 LNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINNLK 224
>Glyma08g01110.1
Length = 149
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 208 QLNGK-YKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELK 250
+LN + Y +LRS++P+ +K+DRAS++GDAI+Y++EL++ ++EL+
Sbjct: 57 KLNDRLYMLLRSVVPNISKMDRASILGDAIEYLKELLQRISELR 100
>Glyma16g26290.1
Length = 409
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 34/42 (80%)
Query: 208 QLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNEL 249
+LN K +LRS++P+ +K+DRAS++GDAIDY+REL + +L
Sbjct: 233 KLNDKLYMLRSVVPNISKMDRASILGDAIDYLRELQVRITDL 274