Miyakogusa Predicted Gene

Lj4g3v0363540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0363540.1 Non Chatacterized Hit- tr|B9S918|B9S918_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,38.82,0.00000005,coiled-coil,NULL; seg,NULL,CUFF.47014.1
         (171 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g03910.1                                                        80   9e-16

>Glyma20g03910.1 
          Length = 198

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 88/207 (42%), Gaps = 52/207 (25%)

Query: 3   EYTEDIKDWEQIEQHPSPETTSEWNMVTKINKSYLNVHDHQXXXXXXXXXXNELX----- 57
           E  E+I +W+QIEQ P     SEWNMV  IN++YL V D            NEL      
Sbjct: 2   ENKENINEWQQIEQFPE---LSEWNMVV-INENYL-VGDQ------ASSTNNELSLLQIV 50

Query: 58  ----------------XXXXXXXXXXHLDWWRRVAYEGKKLL----EAVR--------VV 89
                                      LDW  RV  E KK+L    E VR         V
Sbjct: 51  PTTVTDPEVDGTSSPLTVSSSEGETAPLDWRVRVVSEAKKVLKVRLEGVRERVVGVASKV 110

Query: 90  GNSAVCSGTFWSIT--------CXXXXXXXXXXXEIXXXXXXXXXXSVDHAVCLLREKDE 141
           GN A+C+G FWS T                                 VD  V LL+EKDE
Sbjct: 111 GNWAMCAGAFWSFTQVAGAAAAAAVLLSLVYVGIRRRRRRVGRRNVVVDPWVYLLKEKDE 170

Query: 142 RISQLLLQIAQLNEVLLSRRQVPVHRI 168
           +ISQLL QIAQLNE+L SRR+V VH+I
Sbjct: 171 KISQLLFQIAQLNEMLSSRRKVLVHQI 197