Miyakogusa Predicted Gene

Lj4g3v0340930.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0340930.1 Non Chatacterized Hit- tr|K4BNG5|K4BNG5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,47.73,4e-19,Zn-binding ribosomal proteins,Ribosomal protein,
zinc-binding domain; rpmF_bact: ribosomal protein L,CUFF.47004.1
         (123 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g07760.1                                                       155   1e-38
Glyma05g24570.1                                                       153   5e-38
Glyma06g47860.1                                                       105   7e-24

>Glyma08g07760.1 
          Length = 127

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 86/124 (69%), Gaps = 3/124 (2%)

Query: 1   MATRFAILRGNGRNL---LGFNRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTSPSFSFG 57
           MA R AI R     L   LGFNR   SVPQ+PPL GSID+GV S QPVLPEF+ PSFS+G
Sbjct: 1   MAARLAIERSTRWRLSSVLGFNRWIQSVPQSPPLAGSIDLGVRSPQPVLPEFSPPSFSYG 60

Query: 58  DSMELMAVPXXXXXXXXXXXXNGPKALKPIHVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 117
            SMELMAVP            NGPKALKPI V+VLCK CGR RLPH++CC GKPN  +TG
Sbjct: 61  SSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIVLCKSCGRARLPHFFCCGGKPNQGNTG 120

Query: 118 EQNG 121
           EQ G
Sbjct: 121 EQKG 124


>Glyma05g24570.1 
          Length = 127

 Score =  153 bits (386), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 86/124 (69%), Gaps = 3/124 (2%)

Query: 1   MATRFAILRGNGRNL---LGFNRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTSPSFSFG 57
           MA R AI+R     L   LGFNR  HSVPQ+PPL GSID+GV S Q VLPEF SPSFS+G
Sbjct: 1   MAARLAIVRSTRWRLSSVLGFNRFIHSVPQSPPLAGSIDLGVRSPQSVLPEFCSPSFSYG 60

Query: 58  DSMELMAVPXXXXXXXXXXXXNGPKALKPIHVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 117
            SMELMAVP            NGPKALKPI V+VLCK CGR RLPH++CC GKPN  +TG
Sbjct: 61  GSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIVLCKSCGRARLPHFFCCGGKPNQGNTG 120

Query: 118 EQNG 121
           E  G
Sbjct: 121 EHKG 124


>Glyma06g47860.1 
          Length = 115

 Score =  105 bits (263), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 76/125 (60%), Gaps = 17/125 (13%)

Query: 1   MATRFAILRGNGRNL---LGF-NRLFHSVPQAPPLVGSIDIGVPSSQPVLPEFTSPSFSF 56
           MAT   ILR +G  L   LGF NRL HS+PQ+PPL  +ID              + S SF
Sbjct: 1   MAT---ILRSSGGRLGSVLGFFNRLIHSLPQSPPLSATIDF----------SSPTFSSSF 47

Query: 57  GDSMELMAVPXXXXXXXXXXXXNGPKALKPIHVLVLCKGCGRVRLPHYYCCSGKPNHDHT 116
           G SMELMAVP            NGPKALKPI V+VLCK CGR RLPH++CC GKPN  +T
Sbjct: 48  GGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIVLCKSCGRARLPHFFCCGGKPNQGNT 107

Query: 117 GEQNG 121
           GEQ G
Sbjct: 108 GEQKG 112