Miyakogusa Predicted Gene

Lj4g3v0340800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0340800.1 Non Chatacterized Hit- tr|K4BNG5|K4BNG5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,46.56,4e-19,Ribosomal_L32p,Ribosomal protein L32p; Zn-binding
ribosomal proteins,Ribosomal protein, zinc-binding,CUFF.46998.1
         (126 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g07760.1                                                       148   1e-36
Glyma05g24570.1                                                       147   3e-36
Glyma06g47860.1                                                       100   4e-22

>Glyma08g07760.1 
          Length = 127

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 86/124 (69%), Gaps = 6/124 (4%)

Query: 7   MATKFAILRGNG---RSLLGFNRLFHSVP---PLAGSIDIGVPSSQPVLPEFTSPSFSFG 60
           MA + AI R       S+LGFNR   SVP   PLAGSID+GV S QPVLPEF+ PSFS+G
Sbjct: 1   MAARLAIERSTRWRLSSVLGFNRWIQSVPQSPPLAGSIDLGVRSPQPVLPEFSPPSFSYG 60

Query: 61  DSMELMAVPXXXXXXXXXXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 120
            SMELMAVP            NGPKALKPIPV+VLCK CGR RLPH++CC GKPN  +TG
Sbjct: 61  SSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIVLCKSCGRARLPHFFCCGGKPNQGNTG 120

Query: 121 EQNG 124
           EQ G
Sbjct: 121 EQKG 124


>Glyma05g24570.1 
          Length = 127

 Score =  147 bits (370), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 86/124 (69%), Gaps = 6/124 (4%)

Query: 7   MATKFAILRGNG---RSLLGFNRLFHSVP---PLAGSIDIGVPSSQPVLPEFTSPSFSFG 60
           MA + AI+R       S+LGFNR  HSVP   PLAGSID+GV S Q VLPEF SPSFS+G
Sbjct: 1   MAARLAIVRSTRWRLSSVLGFNRFIHSVPQSPPLAGSIDLGVRSPQSVLPEFCSPSFSYG 60

Query: 61  DSMELMAVPXXXXXXXXXXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGKPNHDHTG 120
            SMELMAVP            NGPKALKPIPV+VLCK CGR RLPH++CC GKPN  +TG
Sbjct: 61  GSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIVLCKSCGRARLPHFFCCGGKPNQGNTG 120

Query: 121 EQNG 124
           E  G
Sbjct: 121 EHKG 124


>Glyma06g47860.1 
          Length = 115

 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 76/125 (60%), Gaps = 20/125 (16%)

Query: 7   MATKFAILRGNGR---SLLGF-NRLFHSVP---PLAGSIDIGVPSSQPVLPEFTSPSFSF 59
           MAT   ILR +G    S+LGF NRL HS+P   PL+ +ID              + S SF
Sbjct: 1   MAT---ILRSSGGRLGSVLGFFNRLIHSLPQSPPLSATIDF----------SSPTFSSSF 47

Query: 60  GDSMELMAVPXXXXXXXXXXXXNGPKALKPIPVLVLCKGCGRVRLPHYYCCSGKPNHDHT 119
           G SMELMAVP            NGPKALKPIPV+VLCK CGR RLPH++CC GKPN  +T
Sbjct: 48  GGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIVLCKSCGRARLPHFFCCGGKPNQGNT 107

Query: 120 GEQNG 124
           GEQ G
Sbjct: 108 GEQKG 112