Miyakogusa Predicted Gene

Lj4g3v0310500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0310500.1 Non Chatacterized Hit- tr|K4C232|K4C232_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,43.31,5e-18,DNA
POLYMERASE DELTA SUBUNIT 4,NULL; DNA_pol_delta_4,DNA polymerase delta,
subunit 4,CUFF.46817.1
         (108 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g25400.1                                                       138   1e-33
Glyma08g08420.1                                                       125   7e-30
Glyma15g14310.1                                                        73   7e-14

>Glyma05g25400.1 
          Length = 112

 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 81/107 (75%), Gaps = 2/107 (1%)

Query: 3   SVSGIYRQKKKNPAPTKSSKKQP-PSRAATTAVPQTPALPDLQDESNGNEAVLRQFDLNM 61
           ++ G YRQKK   A  KSSKK P P+ A + A+      PDL+DE   +E  LRQFDLNM
Sbjct: 7   NIKGFYRQKK-TTATKKSSKKSPIPAAAQSPALISHGGKPDLEDEYKESEVALRQFDLNM 65

Query: 62  AYGPCIGMPRLARWERAQKLGLNPPQEIERLLKSGKVQAESLWNGCI 108
           AYGPC+GM RLARWERAQ+LGLNPPQEI+RLLKSGKVQ ESLW+G I
Sbjct: 66  AYGPCLGMTRLARWERAQRLGLNPPQEIDRLLKSGKVQTESLWDGRI 112


>Glyma08g08420.1 
          Length = 104

 Score =  125 bits (315), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 76/106 (71%), Gaps = 8/106 (7%)

Query: 3   SVSGIYRQKKKNPAPTKSSKKQPPSRAATTAVPQTPALPDLQDESNGNEAVLRQFDLNMA 62
           ++ G YRQKK     T ++KK P     + A+      PDL+DE   +E VLRQFDLNMA
Sbjct: 7   NMKGFYRQKK-----TIATKKSP---ILSPAIISLGGKPDLEDEHKESEVVLRQFDLNMA 58

Query: 63  YGPCIGMPRLARWERAQKLGLNPPQEIERLLKSGKVQAESLWNGCI 108
           YGPC+GM RLARWERAQ+L LNPPQEIERLLKSGKV  ESLW+G I
Sbjct: 59  YGPCLGMTRLARWERAQRLDLNPPQEIERLLKSGKVPTESLWDGRI 104


>Glyma15g14310.1 
          Length = 59

 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 45 DESNGNEAVLRQFDLNMAYGPCIGMPRLARWERAQKLGLNPPQEIERLLKSGKVQ 99
          ++ +  E VLR FD+NM YGPC+G+ RL RWERA K+ LNPP++I+ LL+  K Q
Sbjct: 1  EDYSSEEHVLRMFDMNMKYGPCLGLTRLQRWERAHKMSLNPPEQIKCLLEGDKAQ 55