Miyakogusa Predicted Gene
- Lj4g3v0189820.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0189820.1 tr|I3SKG4|I3SKG4_MEDTR Peptidyl-prolyl cis-trans
isomerase OS=Medicago truncatula PE=2 SV=1,70.56,0,seg,NULL;
PEPTIDYLPROLYL ISOMERASE,NULL; PEPTIDYL-PROLYL CIS-TRANS
ISOMERASE,Peptidyl-prolyl cis-tra,CUFF.46622.1
(212 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g09480.1 191 7e-49
Glyma08g14740.2 100 8e-22
Glyma08g14740.1 100 8e-22
Glyma05g26510.1 75 5e-14
Glyma11g01660.1 61 9e-10
Glyma01g44160.1 61 1e-09
Glyma11g13320.1 61 1e-09
Glyma12g05340.1 61 1e-09
Glyma11g13320.2 60 1e-09
Glyma16g10750.1 57 2e-08
Glyma03g21680.2 55 5e-08
Glyma03g21680.1 55 7e-08
Glyma08g11240.1 51 7e-07
Glyma10g07290.1 51 1e-06
Glyma05g28260.1 50 2e-06
Glyma07g14250.1 49 4e-06
Glyma03g26680.1 49 4e-06
>Glyma08g09480.1
Length = 216
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 119/179 (66%), Gaps = 6/179 (3%)
Query: 36 IKCAAT---QLQPPVTAQKESQFKRRDAIGLALSVGILQAFFPPKPASAAVEAPPCELTA 92
+KCA Q+ P +T + Q KRR IGL L+ + A+ + A AA PCE
Sbjct: 40 VKCAVQVQPQVAPRITPDESLQVKRRTLIGL-LAFDAVLAYSSLQAAPAAEN--PCEFQV 96
Query: 93 APSGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVXXX 152
APSGLAFCDKLVG GPQAVKGQLIKAHYVGRLENGK+FDSSYNRG+PLTFRVGVGEV
Sbjct: 97 APSGLAFCDKLVGAGPQAVKGQLIKAHYVGRLENGKVFDSSYNRGKPLTFRVGVGEVIKG 156
Query: 153 XXXXXXXXXXXPPMLAGGKRTLKLPPELXXXXXXXXXXXXXXVIPPDSVLLFDVEFVSK 211
PPMLAGGKRTLK+PPEL +IPPDSVLLFDVEFVSK
Sbjct: 157 WDEGIIGGDGVPPMLAGGKRTLKIPPELGYGSRGAGCRGGSCIIPPDSVLLFDVEFVSK 215
>Glyma08g14740.2
Length = 209
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 66/129 (51%)
Query: 81 AAVEAPPCELTAAPSGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPL 140
A V P CE SGL +CD G G +A G+LI HY R +G +FDSSY R +PL
Sbjct: 72 ATVAEPLCEYNYVKSGLGYCDIAEGFGDEAPLGELINVHYTARFADGIVFDSSYKRARPL 131
Query: 141 TFRVGVGEVXXXXXXXXXXXXXXPPMLAGGKRTLKLPPELXXXXXXXXXXXXXXVIPPDS 200
T R+GVG+V PPM GGKR L++PP L IP ++
Sbjct: 132 TMRIGVGKVIKGLDQGILGGEGVPPMRIGGKRKLQIPPHLAYGPEPAGCFSGDCNIPANA 191
Query: 201 VLLFDVEFV 209
LL+D+ FV
Sbjct: 192 TLLYDINFV 200
>Glyma08g14740.1
Length = 209
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 66/129 (51%)
Query: 81 AAVEAPPCELTAAPSGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPL 140
A V P CE SGL +CD G G +A G+LI HY R +G +FDSSY R +PL
Sbjct: 72 ATVAEPLCEYNYVKSGLGYCDIAEGFGDEAPLGELINVHYTARFADGIVFDSSYKRARPL 131
Query: 141 TFRVGVGEVXXXXXXXXXXXXXXPPMLAGGKRTLKLPPELXXXXXXXXXXXXXXVIPPDS 200
T R+GVG+V PPM GGKR L++PP L IP ++
Sbjct: 132 TMRIGVGKVIKGLDQGILGGEGVPPMRIGGKRKLQIPPHLAYGPEPAGCFSGDCNIPANA 191
Query: 201 VLLFDVEFV 209
LL+D+ FV
Sbjct: 192 TLLYDINFV 200
>Glyma05g26510.1
Length = 99
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 107 GPQAVKGQL-----IKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVXXXXXXXXXXXX 161
G + V QL I AHYVGRLENGK+FDSSYNRG+PL FRVGVGEV
Sbjct: 4 GSEGVHTQLMLSLGIFAHYVGRLENGKVFDSSYNRGKPLCFRVGVGEVIKGWDEGIIGGD 63
Query: 162 XXPPMLAGGK 171
PPMLA G
Sbjct: 64 GVPPMLAEGN 73
>Glyma11g01660.1
Length = 503
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 77 KPASAAVEAPPCELTAAPSGLAFCDKLVG--TGPQAVKGQLIKAHYVGRLE-NGKIFDSS 133
K E P ++ P+GL + +G G +A G+ + Y+G+L+ +GKIFDS+
Sbjct: 377 KKGQKQTETKPSQVRTFPNGLIIEEVFMGKPDGKKAAPGKKVSVKYIGKLQKDGKIFDSN 436
Query: 134 YNRGQPLTFRVGVGEVXXXXXXXXXXXXXXPPMLAGGKRTLKLPPELXXXXXXXXXXXXX 193
R P FR+GVG+V M G KR + +PP +
Sbjct: 437 VGRA-PFKFRLGVGQVIKGWEVGING------MRIGDKRRITIPPSMGYADKRVGS---- 485
Query: 194 XVIPPDSVLLFDVEFVS 210
IPP+S L+FDVE V
Sbjct: 486 --IPPNSWLVFDVELVD 500
>Glyma01g44160.1
Length = 503
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 71 QAFFPPKPASAAVEAPPCELTAAPSGLAFCDKLVG--TGPQAVKGQLIKAHYVGRLE-NG 127
Q K E P ++ P+GL + +G G +A G+ + Y+G+L+ +G
Sbjct: 371 QNLSTEKKGKKQTETKPSQVRTFPNGLIIEEVFMGKPDGKKAAPGKKVSVKYIGKLQKDG 430
Query: 128 KIFDSSYNRGQPLTFRVGVGEVXXXXXXXXXXXXXXPPMLAGGKRTLKLPPELXXXXXXX 187
KIFDS+ R P FR+GVG+V M G KR + +PP +
Sbjct: 431 KIFDSNVGRA-PFKFRLGVGQVIKGWEVGING------MRIGDKRRITIPPSMGYADKRV 483
Query: 188 XXXXXXXVIPPDSVLLFDVEFVS 210
IPP S L+FDVE V
Sbjct: 484 GS------IPPSSWLVFDVELVD 500
>Glyma11g13320.1
Length = 232
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 71/159 (44%), Gaps = 21/159 (13%)
Query: 36 IKCAATQLQPPVTAQKESQFKRRDAIGLALSV-GILQAFFPPKPASAAVEAPP------C 88
IK +++ + TA + RRD +GLAL V G+ A E P C
Sbjct: 43 IKVKSSETRECTTAMFNAN-SRRDFLGLALGVSGLFIGSLDANGAGLPPEEKPKLCDDTC 101
Query: 89 E--LTAAP-----SGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPLT 141
E L P SGL + D VG GP G + A+YV + +G+IFDSS +GQP
Sbjct: 102 EKELENVPTVTTGSGLQYKDIKVGQGPSPPIGFQVAANYVAMVPSGQIFDSSLEKGQPYI 161
Query: 142 FRVGVGEVXXXXXXXXXXXXXXPPMLAGGKRTLKLPPEL 180
FRVG G+V M GGKR L +P L
Sbjct: 162 FRVGSGQVIQGLDEGILS------MKVGGKRRLYIPGSL 194
>Glyma12g05340.1
Length = 232
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 71/160 (44%), Gaps = 22/160 (13%)
Query: 36 IKCAATQLQPPVTAQKESQFKRRDAIGLALSV--GILQAFFPPKPASAAVEAPP------ 87
+K +++ + TA + RRD +GLAL V G+ A E P
Sbjct: 42 VKVKSSETRECTTAMFNAN-SRRDFLGLALGVSGGLFMGSLDANGAGLPPEEKPKLCDDT 100
Query: 88 CE--LTAAP-----SGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPL 140
CE L P SGL + D VG GP G + A+YV + +G+IFDSS +GQP
Sbjct: 101 CEKELENVPTVTTGSGLQYKDIKVGQGPSPPIGFQVAANYVAMVPSGQIFDSSLEKGQPY 160
Query: 141 TFRVGVGEVXXXXXXXXXXXXXXPPMLAGGKRTLKLPPEL 180
FRVG G+V M GGKR L +P L
Sbjct: 161 IFRVGSGQVIQGLDEGILS------MKVGGKRRLYIPGSL 194
>Glyma11g13320.2
Length = 200
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 36 IKCAATQLQPPVTAQKESQFKRRDAIGLALSV-GILQAFFPPKPASAAVEAPP------C 88
IK +++ + TA + RRD +GLAL V G+ A E P C
Sbjct: 43 IKVKSSETRECTTAMFNAN-SRRDFLGLALGVSGLFIGSLDANGAGLPPEEKPKLCDDTC 101
Query: 89 E--LTAAP-----SGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPLT 141
E L P SGL + D VG GP G + A+YV + +G+IFDSS +GQP
Sbjct: 102 EKELENVPTVTTGSGLQYKDIKVGQGPSPPIGFQVAANYVAMVPSGQIFDSSLEKGQPYI 161
Query: 142 FRVGVGEVXXXXXXXXXXXXXXPPMLAGGKRTLKLP 177
FRVG G+V M GGKR L +P
Sbjct: 162 FRVGSGQVIQGLDEGILS------MKVGGKRRLYIP 191
>Glyma16g10750.1
Length = 154
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 109 QAVKGQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVXXXXXXXXXXXXXXPPMLA 168
QA KG +K HY G+L +G +FDSS+ R P+ F +G G+V M
Sbjct: 49 QAHKGDRVKVHYRGKLTDGTVFDSSFERNNPIEFELGTGQVIKGWDQGLLG------MCL 102
Query: 169 GGKRTLKLPPELXXXXXXXXXXXXXXVIPPDSVLLFDVEFV 209
G KR LK+P +L IP + L+FD E V
Sbjct: 103 GEKRKLKIPSKL-----GYGEQGSPPTIPGGATLIFDAELV 138
>Glyma03g21680.2
Length = 121
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 110 AVKGQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVXXXXXXXXXXXXXXPPMLAG 169
A KG +K HY G+L +G +FDSS+ R P+ F +G G+V M G
Sbjct: 17 AHKGDRVKVHYRGKLTDGTVFDSSFERNNPIEFELGTGQVIKGWDQGLLG------MCLG 70
Query: 170 GKRTLKLPPELXXXXXXXXXXXXXXVIPPDSVLLFDVEFV 209
KR LK+P +L IP + L+FD E V
Sbjct: 71 EKRKLKIPAKL-----GYGDQGSPPTIPGGATLIFDTELV 105
>Glyma03g21680.1
Length = 147
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 110 AVKGQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVXXXXXXXXXXXXXXPPMLAG 169
A KG +K HY G+L +G +FDSS+ R P+ F +G G+V M G
Sbjct: 43 AHKGDRVKVHYRGKLTDGTVFDSSFERNNPIEFELGTGQVIKGWDQGLLG------MCLG 96
Query: 170 GKRTLKLPPELXXXXXXXXXXXXXXVIPPDSVLLFDVEFV 209
KR LK+P +L IP + L+FD E V
Sbjct: 97 EKRKLKIPAKL-----GYGDQGSPPTIPGGATLIFDTELV 131
>Glyma08g11240.1
Length = 570
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 113 GQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVXXXXXXXXXXXXXXPPMLAGGKR 172
G ++ HY G L +G FDSS +RG P FR+G G+V M G
Sbjct: 56 GDQVEVHYTGTLLDGTKFDSSRDRGTPFKFRLGQGQV------IKGWDEGIKTMKKGENA 109
Query: 173 TLKLPPELXXXXXXXXXXXXXXVIPPDSVLLFDVEFVS 210
+PPEL IPP++ L FDVE +S
Sbjct: 110 LFTIPPEL-----AYGESGSPPTIPPNATLQFDVELLS 142
>Glyma10g07290.1
Length = 233
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 13/143 (9%)
Query: 72 AFFPPKPASAAVEAPPCELTAAPSGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFD 131
A + A + P + T P+GL + D VG G +A KG + HYV + ++
Sbjct: 85 AVSTSRRALRGAKIPESDYTTLPNGLKYYDLKVGNGAEAKKGSRVAIHYVAKWKSITFMT 144
Query: 132 SSYNR----GQPLTFRVGVGEVXXXXXXXXXXXXXXPPMLAGGKRTLKLPPELXXXXXXX 187
S G P F VG E M GG+R L +PPEL
Sbjct: 145 SRQGMGVGGGTPYGFDVGQSE---RGTVLKGLDLGVQGMRVGGQRLLIVPPELAYGSKGV 201
Query: 188 XXXXXXXVIPPDSVLLFDVEFVS 210
IPP+S + D+E +S
Sbjct: 202 QE------IPPNSTIELDIELLS 218
>Glyma05g28260.1
Length = 570
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 113 GQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVXXXXXXXXXXXXXXPPMLAGGKR 172
G ++ HY G L +G FDSS +RG P F++G G+V M G
Sbjct: 56 GDQVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGQGQV------IKGWDEGIKTMKKGENA 109
Query: 173 TLKLPPELXXXXXXXXXXXXXXVIPPDSVLLFDVEFVS 210
+PPEL IPP++ L FDVE +S
Sbjct: 110 LFTIPPEL-----AYGESGSPPTIPPNATLQFDVELLS 142
>Glyma07g14250.1
Length = 248
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 93 APSGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVXXX 152
+ SGL + D +VG G GQ + HY+G E+G+ DS+Y +G P R+G +
Sbjct: 125 SDSGLIYRDFVVGQGDFPKDGQQVTFHYIGYNESGRRIDSTYLQGSPAKIRMGTKGL--- 181
Query: 153 XXXXXXXXXXXPPMLAGGKRTLKLPPEL 180
M GGKR + +PPEL
Sbjct: 182 ---VPGFEEGIKDMRPGGKRRIIIPPEL 206
>Glyma03g26680.1
Length = 248
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 93 APSGLAFCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGQPLTFRVGVGEVXXX 152
+ SGL + D +VG G GQ + HY+G E+G+ DS+Y +G P R+G +
Sbjct: 125 SDSGLIYRDFVVGQGDCPKDGQQVTFHYIGYNESGRRIDSTYLQGTPAKIRMGTKGLVPG 184
Query: 153 XXXXXXXXXXXPPMLAGGKRTLKLPPEL 180
M GGKR + +PPEL
Sbjct: 185 FEEGIR------DMRPGGKRRIIIPPEL 206