Miyakogusa Predicted Gene

Lj4g3v0151620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0151620.1 tr|Q5QNL2|Q5QNL2_ORYSJ DNA polymerase delta p66
subunit-like OS=Oryza sativa subsp. japonica
GN=P045,38.14,7e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.46540.1
         (283 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36020.1                                                       208   6e-54
Glyma13g34330.1                                                       127   1e-29

>Glyma12g36020.1 
          Length = 479

 Score =  208 bits (529), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 134/283 (47%), Positives = 157/283 (55%), Gaps = 40/283 (14%)

Query: 2   GSTKSNIVHQPPKHIPHDSIFNVDLKPQNVVKDVKSLNNGIGNTEAEDYANKTTPDKGRA 61
           G TKS+IV QPPK+I H                                       K +A
Sbjct: 168 GPTKSDIVQQPPKNISH---------------------------------------KEKA 188

Query: 62  LPLPTDKNIVQSNKNGPVTGGSLASFWGRASAKSKPCSPPAENSSTVSNPSEATEVAQTC 121
            PLPT K  VQ++K+G V GGSLAS WGRASAK KPCS  AEN++ +SNP  +TE  QT 
Sbjct: 189 PPLPTGKKKVQADKSGSVNGGSLASLWGRASAKPKPCSSSAENNNKISNPLVSTEAGQTA 248

Query: 122 AHEVRXXXXXXXXXXXIAXXXXXXXXXXVVLDFSDEDED-VISLASPDFPYXXXXXXXXX 180
           A E             ++          VV DFSDEDED V+SLASPD P          
Sbjct: 249 ACEAEECDSGNDDNQDVSLRRSSNRKRRVVFDFSDEDEDDVVSLASPDLPNKQSSLDSRQ 308

Query: 181 XXXXXXEKPTLNFDLEIENKSRVKEERVTQQKAHQPHRGDSSVISKCTNTGRXXXXXXXX 240
                 EK TLNFDL+ ENKS VKEER T+QKAH P R + S IS+CTNTG+        
Sbjct: 309 NDKKTSEKTTLNFDLQEENKSGVKEERATEQKAHLPLRENVSAISRCTNTGKSSSEKLQS 368

Query: 241 XXXEICVNKDSIKNATPGSPKRKKVMKTRIDERGREVTEVVWE 283
              E+ +NKDS+ NA P SPKR+KVMKTRIDERGREVTEVVW+
Sbjct: 369 GAPEVHLNKDSVNNAPPCSPKRRKVMKTRIDERGREVTEVVWD 411


>Glyma13g34330.1 
          Length = 248

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 82/110 (74%)

Query: 2   GSTKSNIVHQPPKHIPHDSIFNVDLKPQNVVKDVKSLNNGIGNTEAEDYANKTTPDKGRA 61
           G TKSNIVHQP K+I  DSI  VD KPQ+VVK+VKS +NGIGNT   D  N  T DK +A
Sbjct: 85  GPTKSNIVHQPSKNIACDSIDKVDTKPQSVVKEVKSESNGIGNTVVHDNINTPTADKEKA 144

Query: 62  LPLPTDKNIVQSNKNGPVTGGSLASFWGRASAKSKPCSPPAENSSTVSNP 111
            PLPT +  VQ++K+G V GGSLAS WGRASAK +PCS  AEN++ +SNP
Sbjct: 145 PPLPTGQKKVQADKSGSVNGGSLASLWGRASAKPRPCSSSAENNNKISNP 194