Miyakogusa Predicted Gene

Lj4g3v0070820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0070820.1 tr|B9H0U7|B9H0U7_POPTR Chromatin remodeling
complex subunit (Fragment) OS=Populus trichocarpa
GN=CHR,74.07,1e-18,ATP BINDING / DNA BINDING / HELICASE,NULL;
SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT
REGULAT,NODE_62797_length_208_cov_14.543269.path1.1
         (68 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36460.1                                                       129   6e-31
Glyma13g27170.1                                                       126   4e-30

>Glyma12g36460.1 
          Length = 883

 Score =  129 bits (325), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/67 (79%), Positives = 62/67 (92%)

Query: 2   ADSWNTKAKVDVYGINVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGC 61
           +DSWN+K K DV+GINVAEDD++ T+I+AHPRHMKQMK HQ+EGFNFLVRNL GD+PGGC
Sbjct: 315 SDSWNSKGKADVFGINVAEDDLVVTDIAAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGC 374

Query: 62  ILAHAPG 68
           ILAHAPG
Sbjct: 375 ILAHAPG 381


>Glyma13g27170.1 
          Length = 824

 Score =  126 bits (317), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/67 (80%), Positives = 60/67 (89%)

Query: 2   ADSWNTKAKVDVYGINVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGC 61
           +DS NTK K D +GINVAEDD++ TEISAHPRHMKQMK HQ+EGFNFL RNLVGD+PGGC
Sbjct: 269 SDSRNTKGKADAFGINVAEDDLIVTEISAHPRHMKQMKPHQVEGFNFLARNLVGDDPGGC 328

Query: 62  ILAHAPG 68
           ILAHAPG
Sbjct: 329 ILAHAPG 335