Miyakogusa Predicted Gene

Lj3g3v3765550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3765550.1 Non Chatacterized Hit- tr|I1R4H9|I1R4H9_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,28.7,1e-17,coiled-coil,NULL; GB DEF: F15O4.40,NULL; FAMILY
NOT NAMED,NULL; seg,NULL,CUFF.46329.1
         (672 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g25980.1                                                       417   e-116

>Glyma08g25980.1 
          Length = 679

 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 240/322 (74%), Gaps = 35/322 (10%)

Query: 18  IPHILKPEVQYVELSIEKFIPRQKNVSDDHLHISPSKDKLTLAEIDLLENYFHQTGENKC 77
           IPH+LKPEV+ VELSIEKFIPR KNV DD LHISPSKDKLT+AEIDLLE YFH T EN  
Sbjct: 158 IPHVLKPEVKCVELSIEKFIPRPKNVKDDELHISPSKDKLTVAEIDLLETYFHPTVENNS 217

Query: 78  RLSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGLIAIPKDRKT--LQEHQWLGDS 135
           R+SLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGL++ P+D KT  LQE   LG  
Sbjct: 218 RMSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGLVSFPEDDKTSSLQEDLCLGHG 277

Query: 136 KQIAIAELDEAIKDNESCRTHTVGRNGVSVSCLELDSCHLGIQTKEFVDLTQEDSTLCDL 195
           K +   ELDEA KDNESC  H + RN VSV+CLE+DSCHLGIQ+K+ VDLT++D T CDL
Sbjct: 278 KPVTTTELDEAKKDNESCSRHKMRRNLVSVNCLEMDSCHLGIQSKDLVDLTRQDGTFCDL 337

Query: 196 VKNQDETCEGDEIIPETPIAMRNVSNEGAKAGETVNVAESQTSLMAANACISGMGDEEFS 255
            KNQ+E CEGDE IPETPIA R++SNEG   G+ VN+ E +TS +AANACI+GM DEE S
Sbjct: 338 GKNQEEACEGDETIPETPIAKRSLSNEGDNDGQMVNLVEIETSSLAANACINGMRDEELS 397

Query: 256 PRLTNFIKSGVVPESPIDERGPLKDKCVIRDCISPVHFQEEQGVSALNSRDTEKVIIDHD 315
           PRLTN I+SGVVPESP+DER                                 +VIID  
Sbjct: 398 PRLTNLIRSGVVPESPVDER---------------------------------EVIIDKG 424

Query: 316 TCKNVCTSPVSKTQTPLLKLKN 337
           T KNVCTSP+++TQ+PLL LKN
Sbjct: 425 TNKNVCTSPINETQSPLLDLKN 446



 Score =  239 bits (611), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 132/247 (53%), Positives = 155/247 (62%), Gaps = 36/247 (14%)

Query: 426 QGKRKSTHNVREFIEEEAEVSSDAYVSNDEDVEDGNSHDSFIDDRTNPTAASQPEASRID 485
           +GKRKSTHNVR+FIEEEAEVSSD YVSNDED E+G+S DSFIDDRTNPTAASQPEASR+D
Sbjct: 469 KGKRKSTHNVRDFIEEEAEVSSDGYVSNDEDDEEGSSFDSFIDDRTNPTAASQPEASRMD 528

Query: 486 MMAIYRRSLLSQTPINGGLNFPATFSPDDVMTTASISESRDSSGKTVSHFRTGPTNQSAN 545
                                        +M                 H  +   +   +
Sbjct: 529 -----------------------------MMAIYRYFIFLPFLFLLFLHCHSITNHHLRS 559

Query: 546 RTSESVHIDQITSEAVXXXXXXXXXXXDVRSRKRRLTFYHSGHFPNVNLEQEFALESKKE 605
             S+       T +AV           + RS KRRL FYHSGHFPN+NL++EF L+SKK+
Sbjct: 560 LLSQ-------TPKAVASTCYPMGTGTETRSHKRRLAFYHSGHFPNMNLQREFELQSKKD 612

Query: 606 SVDGEATIDVLCDDQFYNDLDLDELEAQATSLLKEKSDLSSHKQTTAPQSHATNLDVFRS 665
            V  +AT DVLCDDQFYNDLDLDELEAQAT LLK+K DLS+ KQ T PQSH +NLD+F+S
Sbjct: 613 VVHTDATTDVLCDDQFYNDLDLDELEAQATLLLKQKLDLSNQKQDTVPQSHTSNLDIFQS 672

Query: 666 PSFDLGI 672
           PSFDLGI
Sbjct: 673 PSFDLGI 679