Miyakogusa Predicted Gene

Lj3g3v3725520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3725520.1 Non Chatacterized Hit- tr|I1HU49|I1HU49_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,43.97,3e-19,SUBFAMILY NOT NAMED,NULL; DNA-DIRECTED RNA POLYMERASE
III,RNA polymerase III Rpc4; RNA_pol_Rpc4,RNA ,CUFF.46233.1
         (115 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g36500.1                                                       146   4e-36
Glyma12g00860.1                                                       132   1e-31
Glyma13g16900.1                                                       119   8e-28
Glyma17g05820.2                                                       115   1e-26
Glyma17g05820.1                                                       114   2e-26
Glyma01g44320.1                                                       108   1e-24

>Glyma09g36500.1 
          Length = 303

 Score =  146 bits (369), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 91/115 (79%), Gaps = 3/115 (2%)

Query: 1   MLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGTCAMKDLPKGFLGKMLIYKSGA 60
           M FF++P PLP+ K+S   KGKEK  ++T +G+  K    A+++LP+G++GKML+YKSGA
Sbjct: 192 MFFFQIPTPLPMDKQSN--KGKEKIGTSTVSGEATK-SKNALEELPRGYMGKMLVYKSGA 248

Query: 61  IKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDSLEL 115
           IKLKLGE L DVSPGS C   QDV+A+NTAQK CC LGE+SK+VVV PDLDS+EL
Sbjct: 249 IKLKLGETLLDVSPGSNCRCVQDVMAVNTAQKQCCNLGEISKRVVVVPDLDSIEL 303


>Glyma12g00860.1 
          Length = 345

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 87/115 (75%), Gaps = 4/115 (3%)

Query: 1   MLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGTCAMKDLPKGFLGKMLIYKSGA 60
           MLFF+ P  LPL K++   KGKEK   +T + +  K    A+++LP+G++GKML+YKSGA
Sbjct: 235 MLFFKFPT-LPLVKQTN--KGKEKIGKSTVSQEATK-SKSALEELPRGYMGKMLVYKSGA 290

Query: 61  IKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDSLEL 115
           IKLKLGE ++DVSPGS     QD+VA+NTAQK CC LGEL K+VVV PDLDS+EL
Sbjct: 291 IKLKLGETMFDVSPGSNSVSVQDIVAVNTAQKQCCNLGELRKRVVVVPDLDSIEL 345


>Glyma13g16900.1 
          Length = 278

 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 1/114 (0%)

Query: 1   MLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGT-CAMKDLPKGFLGKMLIYKSG 59
           M F  LP  LP+ K+S +    +    +   G    +   C + +L  GF+GKML+YKSG
Sbjct: 158 MFFINLPTKLPMIKQSATAGSSDVNVKSRPHGGSKNVEELCELNELSSGFMGKMLVYKSG 217

Query: 60  AIKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDSL 113
           AIKLKLG+ LYDVS G KC  AQD+VA+NTAQK CC +GE+SK+V +TPD+D++
Sbjct: 218 AIKLKLGDTLYDVSSGMKCACAQDLVAINTAQKHCCTIGEISKRVSITPDIDAI 271


>Glyma17g05820.2 
          Length = 134

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 1/114 (0%)

Query: 1   MLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGT-CAMKDLPKGFLGKMLIYKSG 59
           M    LP  LP+ K+S +   K+    +   G    +   C + +L  GF+GKML+YKSG
Sbjct: 14  MFLINLPTKLPMIKQSATAGDKDVNEKSIPHGGSKNVEELCELNELSSGFMGKMLVYKSG 73

Query: 60  AIKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDSL 113
           AIKLKLG  LYDVS G  C  AQD+VA+NTAQK CC +GE+SK V +TPD+D++
Sbjct: 74  AIKLKLGNTLYDVSSGMNCACAQDLVAVNTAQKHCCTIGEISKHVTITPDVDAI 127


>Glyma17g05820.1 
          Length = 298

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 1/114 (0%)

Query: 1   MLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGT-CAMKDLPKGFLGKMLIYKSG 59
           M    LP  LP+ K+S +   K+    +   G    +   C + +L  GF+GKML+YKSG
Sbjct: 178 MFLINLPTKLPMIKQSATAGDKDVNEKSIPHGGSKNVEELCELNELSSGFMGKMLVYKSG 237

Query: 60  AIKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDSL 113
           AIKLKLG  LYDVS G  C  AQD+VA+NTAQK CC +GE+SK V +TPD+D++
Sbjct: 238 AIKLKLGNTLYDVSSGMNCACAQDLVAVNTAQKHCCTIGEISKHVTITPDVDAI 291


>Glyma01g44320.1 
          Length = 190

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 76/114 (66%), Gaps = 20/114 (17%)

Query: 1   MLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGTCAMKDLPKGFLGKMLIYKSGA 60
           M FF++PA LP               ++T +G+P  L     KDLP+G++GKML+YKSGA
Sbjct: 94  MFFFKIPAYLP--------------GTSTVSGEPTHL-----KDLPRGYMGKMLVYKSGA 134

Query: 61  IKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDSLE 114
           I LKLGE L+DV PGS     +DVVA+NT QK CC LG++SK+V VTP++D L+
Sbjct: 135 INLKLGESLFDVYPGSNRGHVEDVVAVNT-QKQCCNLGKISKRVNVTPNIDFLD 187