Miyakogusa Predicted Gene

Lj3g3v3690070.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3690070.2 tr|B9GIW6|B9GIW6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_752084 PE=4
SV=1,45.66,0.000004,seg,NULL,CUFF.46219.2
         (209 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g01030.1                                                       171   4e-43

>Glyma12g01030.1 
          Length = 1348

 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/186 (63%), Positives = 124/186 (66%), Gaps = 10/186 (5%)

Query: 29  VPQTQVHPQGPQLQPNATIQHLSQAQVHPHQPVTPNVQHQVPNPSSHAVTGHHSYPQSLP 88
           VPQ+QVH Q   LQPNA IQH SQ  V PHQPVTPNVQ  V N  SH+VTGHHSYPQ LP
Sbjct: 391 VPQSQVHAQ---LQPNAPIQHHSQLPVPPHQPVTPNVQTPVQNAMSHSVTGHHSYPQPLP 447

Query: 89  HQNMQPGGPQQTMHMHPQSGPQFQAQHSVQMQNQFPQQIPAMRPNQSHAMFPNQQH---- 144
           H NMQP  PQ TMHMHPQSG Q QAQH VQMQNQFP QIP  RPNQSHAMFPNQQ     
Sbjct: 448 HPNMQPRVPQHTMHMHPQSGHQPQAQHPVQMQNQFPPQIPTARPNQSHAMFPNQQQPALL 507

Query: 145 -QTVQGQSAPSLHQQQPVYAHNQQPGQIGQRPIXXXXXXXXXXXXXXXXXXXXXSHLRPQ 203
             +VQGQ+ P L QQQ +Y HNQQPGQI QRP                      SHL+PQ
Sbjct: 508 PSSVQGQTTPPL-QQQSLYTHNQQPGQINQRPT-LPPVQQIPQQPFAQHQMPMPSHLQPQ 565

Query: 204 GPAQSI 209
           GPA S 
Sbjct: 566 GPAHSF 571