Miyakogusa Predicted Gene

Lj3g3v3653450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3653450.1 tr|C7J8U1|C7J8U1_ORYSJ Os11g0146550 protein
OS=Oryza sativa subsp. japonica GN=Os11g0146550 PE=4
SV=,70.31,2e-18,FAMILY NOT NAMED,NULL; GIY-YIG,UvrABC system subunit
C, N-terminal; GIY-YIG endonuclease,UvrABC syst,CUFF.46159.1
         (109 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g36020.1                                                       154   2e-38
Glyma18g06170.1                                                        52   1e-07
Glyma11g30050.1                                                        51   2e-07

>Glyma09g36020.1 
          Length = 173

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 82/122 (67%), Gaps = 13/122 (10%)

Query: 1   MRTLCRSFRSMKRPIPNPNLXXXXXXXXXXXX-------------XXWCVYLILSTNHPI 47
           M TL   FRS+KRP  NP L                           W VYLILSTNHPI
Sbjct: 2   MGTLSTQFRSIKRPNSNPKLSKSSSPTKSEIKFNAKPKPKSESESESWSVYLILSTNHPI 61

Query: 48  KTYVGVTTNFPRRLKQHNGQLIGGAKASRAGRPWICACVICGFTNRSEACAFESKWKVFS 107
           KTYVG+T NFPRRLKQHNG+L GGAKASRAGRPWICAC+ICGFT+RSEA  FESKWK FS
Sbjct: 62  KTYVGITNNFPRRLKQHNGELKGGAKASRAGRPWICACIICGFTDRSEASVFESKWKTFS 121

Query: 108 RR 109
           RR
Sbjct: 122 RR 123


>Glyma18g06170.1 
          Length = 368

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 34/64 (53%)

Query: 41  LSTNHPIKTYVGVTTNFPRRLKQHNGQLIGGAKASRAGRPWICACVICGFTNRSEACAFE 100
           LS  +   TY+G T N  RR++QHNG++  GA  +R  RPW     I GF     A  FE
Sbjct: 36  LSPRYKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTRKRRPWEMVLCIYGFPTNVSALQFE 95

Query: 101 SKWK 104
             W+
Sbjct: 96  WAWQ 99


>Glyma11g30050.1 
          Length = 380

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 38  YLILSTNHPIK--TYVGVTTNFPRRLKQHNGQLIGGAKASRAGRPWICACVICGFTNRSE 95
           YL+ S +   K  TY+G T N  RR++QHNG++  GA  ++  RPW     I GF     
Sbjct: 39  YLLTSLSPRFKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPTNVS 98

Query: 96  ACAFESKWK 104
           A  FE  W+
Sbjct: 99  ALQFEWAWQ 107