Miyakogusa Predicted Gene

Lj3g3v3639960.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639960.2 tr|Q93V67|Q93V67_9BRYO PpSIG1 OS=Physcomitrella
patens GN=Sig1 PE=2 SV=1,31.18,0.0000000000003,no description,NULL;
Sigma2 domain of RNA polymerase sigma factors,RNA polymerase sigma
factor, regi,CUFF.46126.2
         (300 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g35750.2                                                       441   e-124
Glyma09g35750.1                                                       441   e-124
Glyma12g01600.1                                                       435   e-122
Glyma07g35990.1                                                        98   1e-20
Glyma04g00330.1                                                        57   4e-08
Glyma13g20700.1                                                        52   1e-06

>Glyma09g35750.2 
          Length = 468

 Score =  441 bits (1135), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/297 (73%), Positives = 248/297 (83%), Gaps = 6/297 (2%)

Query: 1   MATAAVIXXXXXXXXXXXXXXXXDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQA 60
           MATAAVI                D+IEKLS  SDFGSTHYQIVP KS+  AKKSS+YT  
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60

Query: 61  FPASDRPNQSIKALKEHVDGVPAAAETWFQECDSNDLEVESSDLGYSVEALLLLQKSMLE 120
           FPAS++ NQSIKALKEHVD  P  A++WFQ C+SNDLEVESS++GYSVEALLLLQKSMLE
Sbjct: 61  FPASNQQNQSIKALKEHVDDAPTIADSWFQSCNSNDLEVESSEMGYSVEALLLLQKSMLE 120

Query: 121 KQWSLSCEREVLTEHPRQEKSSKKVAVTCSGVSARQRRINTKRKIPGKTGSAMQACDAMQ 180
           KQW+LS EREVLTEH  + K  KKVAVTCSGVSARQRR+NTKRK      +A++ C AMQ
Sbjct: 121 KQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNTKRK------TAIKTCGAMQ 174

Query: 181 MRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEP 240
           ++S ISPELLQ+R KGYVKG+VSE+LLSHAEVV LSE+IKVGLSL+EHKSRLKE+LGCEP
Sbjct: 175 LKSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEP 234

Query: 241 SDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 297
           SDDQ+A SLKISR+ELRA+ IECTLARE+LAMSNVRLVMSIAQ+YDN+GAEM DLVQ
Sbjct: 235 SDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQ 291


>Glyma09g35750.1 
          Length = 503

 Score =  441 bits (1135), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/297 (73%), Positives = 248/297 (83%), Gaps = 6/297 (2%)

Query: 1   MATAAVIXXXXXXXXXXXXXXXXDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQA 60
           MATAAVI                D+IEKLS  SDFGSTHYQIVP KS+  AKKSS+YT  
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60

Query: 61  FPASDRPNQSIKALKEHVDGVPAAAETWFQECDSNDLEVESSDLGYSVEALLLLQKSMLE 120
           FPAS++ NQSIKALKEHVD  P  A++WFQ C+SNDLEVESS++GYSVEALLLLQKSMLE
Sbjct: 61  FPASNQQNQSIKALKEHVDDAPTIADSWFQSCNSNDLEVESSEMGYSVEALLLLQKSMLE 120

Query: 121 KQWSLSCEREVLTEHPRQEKSSKKVAVTCSGVSARQRRINTKRKIPGKTGSAMQACDAMQ 180
           KQW+LS EREVLTEH  + K  KKVAVTCSGVSARQRR+NTKRK      +A++ C AMQ
Sbjct: 121 KQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNTKRK------TAIKTCGAMQ 174

Query: 181 MRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEP 240
           ++S ISPELLQ+R KGYVKG+VSE+LLSHAEVV LSE+IKVGLSL+EHKSRLKE+LGCEP
Sbjct: 175 LKSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEP 234

Query: 241 SDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 297
           SDDQ+A SLKISR+ELRA+ IECTLARE+LAMSNVRLVMSIAQ+YDN+GAEM DLVQ
Sbjct: 235 SDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQ 291


>Glyma12g01600.1 
          Length = 503

 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/297 (73%), Positives = 247/297 (83%), Gaps = 6/297 (2%)

Query: 1   MATAAVIXXXXXXXXXXXXXXXXDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQA 60
           MATAAVI                DIIEKLS  SDFGSTHYQIVP KS+ VAKKSS+YT  
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60

Query: 61  FPASDRPNQSIKALKEHVDGVPAAAETWFQECDSNDLEVESSDLGYSVEALLLLQKSMLE 120
           FPAS++ NQSIKALKEHVD  P  A+ WFQ  +SNDLEVESS++GYSVEALLLLQKSMLE
Sbjct: 61  FPASNQQNQSIKALKEHVDDAPTIADPWFQSYNSNDLEVESSEMGYSVEALLLLQKSMLE 120

Query: 121 KQWSLSCEREVLTEHPRQEKSSKKVAVTCSGVSARQRRINTKRKIPGKTGSAMQACDAMQ 180
           KQW+LS EREVLTE+  + K  +KVAVTCSGVSARQRR+NTKRK      +A++ C AMQ
Sbjct: 121 KQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRK------TAIKTCGAMQ 174

Query: 181 MRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEP 240
           ++S ISPELLQ+R KGYVKG+VSE+LLSHAEVV LSEKIKVGLSL+EHKSRLKEKLGCEP
Sbjct: 175 LKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEP 234

Query: 241 SDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 297
           SDDQ+A SLKISR+ELRA+ IEC+LARE+LAMSNVRLVMSIAQ+YDN+GAEM DLVQ
Sbjct: 235 SDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQ 291


>Glyma07g35990.1 
          Length = 126

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 77/157 (49%), Gaps = 39/157 (24%)

Query: 1   MATAAVIXXXXXXXXXXXXXXXXDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQA 60
           MATAAVI                DIIEKLS    +GS+                      
Sbjct: 1   MATAAVIGLRGGKRLLNSSYHYFDIIEKLS----YGSS---------------------- 34

Query: 61  FPASDRPNQSIKALKEHVDGVPAAAETWFQECDSNDLEVESSDLGYSVEALLLLQKSMLE 120
                        L+ +VD  P  A+ WFQ  +SNDLEVESS++GYSVEALLLLQKSMLE
Sbjct: 35  -------------LRTNVDDAPTIADPWFQNYNSNDLEVESSEMGYSVEALLLLQKSMLE 81

Query: 121 KQWSLSCEREVLTEHPRQEKSSKKVAVTCSGVSARQR 157
           KQW+LS EREVLTE       S+     C+ V+   R
Sbjct: 82  KQWNLSFEREVLTEKLSAGDVSRLEICPCAFVTFFPR 118


>Glyma04g00330.1 
          Length = 412

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 197 YVKGVVS-EQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSE 255
           Y++   S  +LL+  E +KLS  I+  L L++ +  L E+ G +P+  Q AA   + +  
Sbjct: 104 YLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKT 163

Query: 256 LRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 297
           LR +       ++++  SN+RLV+SIA+ Y   G  + DLVQ
Sbjct: 164 LRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQ 205


>Glyma13g20700.1 
          Length = 561

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 61/101 (60%)

Query: 197 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 256
           +++G  ++QLL+  +  +L  +I+  L L+E K++L+ + G EP+  + A  + ++   L
Sbjct: 252 FLRGPETKQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRML 311

Query: 257 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 297
            A+    + +RE+L  +N+R+V+ +A+ Y   G  + DL+Q
Sbjct: 312 HAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 352