Miyakogusa Predicted Gene

Lj3g3v3639450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639450.1 tr|A9TS65|A9TS65_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,71.43,1e-18,seg,NULL,CUFF.46066.1
         (266 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g11600.1                                                       334   6e-92
Glyma11g11600.2                                                       182   2e-46
Glyma06g15100.1                                                       108   8e-24
Glyma06g15100.2                                                       105   4e-23
Glyma04g39770.1                                                        56   5e-08
Glyma09g09460.1                                                        54   2e-07

>Glyma11g11600.1 
          Length = 255

 Score =  334 bits (857), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 181/262 (69%), Positives = 203/262 (77%), Gaps = 16/262 (6%)

Query: 1   MNSLVVSSHTSSFRTFPHSSSTQSFNLFPNLRQPTFLNFHFFSSKFKPPHF--IACCXXX 58
           MNSL+ S+  SS   + HSS+         LRQP FL   F SS  K   F  +A C   
Sbjct: 3   MNSLLASTRASSSPLYQHSSTL-------TLRQPHFL---FISSNSKSSAFPLVAYCSSA 52

Query: 59  XXXXXXXXXXXXILQNDIFHAEVTTPNVPSFASPVSKFSFTDQAFFLITFIACTTSVTFT 118
                       IL N  FH++VTTP +P F SPV K SF+DQAFFL+ FIA TTSV FT
Sbjct: 53  PSPNESDQT---ILLNGTFHSQVTTPKIPPFVSPVPKLSFSDQAFFLLAFIASTTSVAFT 109

Query: 119 SLVFAAVPTLFAMRNAAISLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIA 178
           SLVFAAVPTLFAMRNAA+SLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIA
Sbjct: 110 SLVFAAVPTLFAMRNAALSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIA 169

Query: 179 DGVNKSAQALQAAEAGIKQIGSMAQEQTMSMIEERANLPIISLQPVVVGAARKTSRAVGR 238
           DGVNKSAQALQAAEAGI+QIGS+AQ+QT+SMI+ERA+LP+ISLQP V GAARKTSRAVGR
Sbjct: 170 DGVNKSAQALQAAEAGIRQIGSVAQQQTVSMIQERASLPVISLQPAVAGAARKTSRAVGR 229

Query: 239 ATKSLMNIISGKE-GTSEYDDD 259
           ATKSL+NIISG++  T+EYDDD
Sbjct: 230 ATKSLLNIISGRQDATAEYDDD 251


>Glyma11g11600.2 
          Length = 166

 Score =  182 bits (463), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/177 (61%), Positives = 121/177 (68%), Gaps = 15/177 (8%)

Query: 1   MNSLVVSSHTSSFRTFPHSSSTQSFNLFPNLRQPTFLNFHFFSSKFKPPHF--IACCXXX 58
           MNSL+ S+  SS   + HSS+         LRQP FL   F SS  K   F  +A C   
Sbjct: 3   MNSLLASTRASSSPLYQHSSTL-------TLRQPHFL---FISSNSKSSAFPLVAYCSSA 52

Query: 59  XXXXXXXXXXXXILQNDIFHAEVTTPNVPSFASPVSKFSFTDQAFFLITFIACTTSVTFT 118
                       IL N  FH++VTTP +P F SPV K SF+DQAFFL+ FIA TTSV FT
Sbjct: 53  PSPNESDQT---ILLNGTFHSQVTTPKIPPFVSPVPKLSFSDQAFFLLAFIASTTSVAFT 109

Query: 119 SLVFAAVPTLFAMRNAAISLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQ 175
           SLVFAAVPTLFAMRNAA+SLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDL +
Sbjct: 110 SLVFAAVPTLFAMRNAALSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLRK 166


>Glyma06g15100.1 
          Length = 239

 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 13/175 (7%)

Query: 93  VSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPST 152
           +  ++ T++   ++   AC T++  T L  +A+PTL A + AA S+ KL D  REELP+T
Sbjct: 64  LQHWNLTNRHVTVLNVFACATAICATWLFCSAIPTLLAFKKAAESMEKLMDATREELPNT 123

Query: 153 MAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSMAQEQTMSMIEE 212
           MAAIRLSGMEISDLT ELSD+ QEI  GV  S +A++ AE  ++++ ++    ++  +  
Sbjct: 124 MAAIRLSGMEISDLTTELSDIGQEITQGVRSSTRAVRLAEERLRRLTTVPSSASLQGMTI 183

Query: 213 RANLPIISLQPVVVGAARKTSRAV--GRATKSL-----------MNIISGKEGTS 254
                    +P V   AR     +  GRAT  +           +N I+G+   S
Sbjct: 184 NPKAEYDDDEPAVARTARGVREGIVKGRATLQMFFTLTRFSRFALNFITGRRKLS 238


>Glyma06g15100.2 
          Length = 183

 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 75/109 (68%)

Query: 93  VSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPST 152
           +  ++ T++   ++   AC T++  T L  +A+PTL A + AA S+ KL D  REELP+T
Sbjct: 64  LQHWNLTNRHVTVLNVFACATAICATWLFCSAIPTLLAFKKAAESMEKLMDATREELPNT 123

Query: 153 MAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSM 201
           MAAIRLSGMEISDLT ELSD+ QEI  GV  S +A++ AE  ++++ ++
Sbjct: 124 MAAIRLSGMEISDLTTELSDIGQEITQGVRSSTRAVRLAEERLRRLTTV 172


>Glyma04g39770.1 
          Length = 138

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 7/76 (9%)

Query: 81  VTTPNVPSFASPVSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSK 140
           V +P++P        ++ T++   ++   AC T++  T L  +A+PTL A + AA S+ K
Sbjct: 62  VGSPSLP-------HWNLTNRHVTVLNVFACATAICATWLFCSAIPTLLAFKKAAESMEK 114

Query: 141 LADTAREELPSTMAAI 156
           L D  REELP+TMA I
Sbjct: 115 LMDATREELPNTMAVI 130


>Glyma09g09460.1 
          Length = 189

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 117 FTSLVFAAVPTLFAMRNAAISLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQE 176
           F S+   ++PTL A      S+ KL+    EE+P T+ +++LS ME++DLT +LS L  +
Sbjct: 104 FFSVAVFSIPTLIAFGRLGASVKKLSKVVSEEVPGTLHSLKLSSMELNDLTQQLSSLRHK 163

Query: 177 IADGVNKSAQ 186
           IA G++K  Q
Sbjct: 164 IA-GISKGKQ 172