Miyakogusa Predicted Gene

Lj3g3v3541670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3541670.1 Non Chatacterized Hit- tr|B6U9Q2|B6U9Q2_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,42.97,3e-18,seg,NULL,CUFF.45967.1
         (129 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g02720.1                                                       154   2e-38
Glyma04g00730.1                                                       108   2e-24
Glyma06g00750.1                                                        69   9e-13

>Glyma12g02720.1 
          Length = 130

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 91/129 (70%), Gaps = 1/129 (0%)

Query: 1   MAYDRNRGSSVMEGFTLNPLPYPVXXXXXXXXXXXXXSWYLSYEEVVETAQEQFGWVLFA 60
           MAY R+R SSV++GFTLNPLPYPV             SWY SYEEVVETA++Q GW+LF 
Sbjct: 1   MAYGRSRASSVLDGFTLNPLPYPVLLILSLIFIFLGVSWYFSYEEVVETAEQQLGWLLFC 60

Query: 61  TPVVLILLVRWLSSMENTDWFSGLS-PWSGRGRIYEGSSEGSSPWGXXXXXXXXXXMVQF 119
           TPVVLIL+VRWLSSMEN+ WF   S P   RGR ++G SEGSSPWG          MVQ+
Sbjct: 61  TPVVLILIVRWLSSMENSYWFFSASLPGERRGRTHQGLSEGSSPWGVAALILVLLIMVQY 120

Query: 120 QSNFLESWF 128
           QSNFL+SWF
Sbjct: 121 QSNFLDSWF 129


>Glyma04g00730.1 
          Length = 125

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 82/124 (66%), Gaps = 1/124 (0%)

Query: 6   NRGSSVMEGFTLNPLPYPVXXXXXXXXXXXXXSWYLSYEEVVETAQEQFGWVLFATPVVL 65
           +R SSV++GF+LNP+PYPV             SWYLSYEEVVE A+EQ GW+L ATPVVL
Sbjct: 1   SRASSVLDGFSLNPVPYPVLLILSLILLFLGISWYLSYEEVVEAAEEQLGWMLLATPVVL 60

Query: 66  ILLVRWLSSMENTDW-FSGLSPWSGRGRIYEGSSEGSSPWGXXXXXXXXXXMVQFQSNFL 124
           IL+VRWLSS++ ++W F   SPW  R R +   SEGSSPWG          ++ + S FL
Sbjct: 61  ILVVRWLSSVDTSEWFFFNSSPWERRRRTHHFPSEGSSPWGVAALILLVLVLLHYHSTFL 120

Query: 125 ESWF 128
           ++WF
Sbjct: 121 DAWF 124


>Glyma06g00750.1 
          Length = 98

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 57/114 (50%), Gaps = 17/114 (14%)

Query: 8   GSSVMEGFTLNPLPYPVXXXXXXXXXXXXXSWYLSYEEVVETAQEQFGWVLFATPVVLIL 67
            SSV++GFTLNP+PYPV                +    ++       GW+L ATPVVLIL
Sbjct: 1   ASSVLDGFTLNPVPYPV----------------MLILSLILLFLGISGWMLLATPVVLIL 44

Query: 68  LVRWLSSMENTDWFSGLS-PWSGRGRIYEGSSEGSSPWGXXXXXXXXXXMVQFQ 120
           +VRWLSS+  ++WF   S P   R R +   SEGSSP G           V F 
Sbjct: 45  VVRWLSSVYTSEWFFFNSLPLERRRRTHHFPSEGSSPRGVAACSRASSFSVHFS 98