Miyakogusa Predicted Gene

Lj3g3v3540650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3540650.1 CUFF.45964.1
         (132 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g02730.1                                                       101   3e-22
Glyma11g10420.1                                                        78   2e-15
Glyma08g15730.1                                                        60   8e-10

>Glyma12g02730.1 
          Length = 141

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 2/100 (2%)

Query: 1   MGWFSTKKRSVEWKEGCT--GQTMATVSFSPTLHLFVVLGIVISLLWLSHYKSYKSQMHN 58
           MGWF TKK+S EWK+GCT   QT+ T S SPTLHL V+LGIV+SLLWLS Y +YK+Q ++
Sbjct: 1   MGWFYTKKKSAEWKQGCTLQEQTIDTASLSPTLHLLVILGIVLSLLWLSRYTTYKAQQNH 60

Query: 59  SAIEXXXXXXXXXXXXXXXXVAYSTSGKLNFHFTNSYHES 98
           + I                 ++Y T G+LNF F +S HES
Sbjct: 61  TVIYYQLFLFLSPVIFIFLLLSYYTCGRLNFCFMSSRHES 100


>Glyma11g10420.1 
          Length = 87

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 49/64 (76%), Gaps = 3/64 (4%)

Query: 1  MGWFSTKKRSVEWKEGCT--GQTMATV-SFSPTLHLFVVLGIVISLLWLSHYKSYKSQMH 57
          MGWF TKK+S EWK+ C    QT+ T  S SPTLHL V+LGIV+SLLWLS Y +YK+Q +
Sbjct: 1  MGWFYTKKKSAEWKQECILQEQTIDTAASLSPTLHLLVILGIVLSLLWLSQYTTYKAQQN 60

Query: 58 NSAI 61
          ++AI
Sbjct: 61 HTAI 64


>Glyma08g15730.1 
          Length = 93

 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 50/95 (52%), Gaps = 15/95 (15%)

Query: 1  MGWFSTKKRSVEWKEGCTGQTMAT-VSFSPTLHLFVVLGIVISLLWLSHYKSYKSQMHNS 59
          MGWF  KKRSVE   G T Q M T VS SP  HL V+ GIV SLLWLS+Y         +
Sbjct: 1  MGWFYPKKRSVE---GYTSQNMTTAVSPSPNFHLVVIFGIVFSLLWLSNY---------T 48

Query: 60 AIEXXXXXXXXXXXXXXXXVAYSTS--GKLNFHFT 92
          AI                 ++YST+  G+LNF FT
Sbjct: 49 AIYLQFLLMLSPILGILFLISYSTTCGGRLNFSFT 83