Miyakogusa Predicted Gene

Lj3g3v3525970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3525970.1 tr|G7IKW7|G7IKW7_MEDTR SNW domain-containing
protein OS=Medicago truncatula GN=MTR_2g030450 PE=4
SV=,87.74,0,seg,NULL; SKIP_SNW,SKI-interacting protein SKIP, SNW
domain; coiled-coil,NULL; NUCLEAR PROTEIN SKIP-,CUFF.45943.1
         (259 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g01190.1                                                       309   2e-84
Glyma16g08450.1                                                       212   3e-55

>Glyma01g01190.1 
          Length = 542

 Score =  309 bits (791), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 159/203 (78%), Positives = 169/203 (83%), Gaps = 2/203 (0%)

Query: 59  PRRVEDFGDGGAFPEIHVAQYPLDMGRDKS-SKTGSKILPVTVDAHGNVAYDAIVKQNEN 117
           PR++EDFGDGGAFPEIHVAQYPLDMGR+KS +K GSKILPVTVDA+GNVAYDAIV+QNEN
Sbjct: 1   PRKIEDFGDGGAFPEIHVAQYPLDMGREKSGAKPGSKILPVTVDANGNVAYDAIVRQNEN 60

Query: 118 AKKIVYTQQKDLIPKILKNXXXXXXXXXXX-VQKEIEETMQETKAALEKIVNVRLSAAQP 176
           A+KIVYTQQKDLIPK LKN             QK+IEETMQETKAALEKIVNVRLSAAQP
Sbjct: 61  ARKIVYTQQKDLIPKFLKNDEDDDDVVSDDEAQKQIEETMQETKAALEKIVNVRLSAAQP 120

Query: 177 KNVAKQSSDSKYIKYKPSQQSAAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAXXXX 236
           KNV KQ+SD+KYIKYKPSQQS AFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPKA    
Sbjct: 121 KNVPKQNSDAKYIKYKPSQQSDAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPKASGSP 180

Query: 237 XXXXXXXXXXXXTVKDQQDWKIP 259
                       TVKDQQDWKIP
Sbjct: 181 PVPVMHSPPRPVTVKDQQDWKIP 203


>Glyma16g08450.1 
          Length = 512

 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 110/146 (75%), Positives = 115/146 (78%)

Query: 114 QNENAKKIVYTQQKDLIPKILKNXXXXXXXXXXXVQKEIEETMQETKAALEKIVNVRLSA 173
           QNENA+KIVYTQQKDLIPK LKN            QK+IEETMQETKAALEKIVNVRLSA
Sbjct: 28  QNENARKIVYTQQKDLIPKCLKNDEEDDDVSDDETQKQIEETMQETKAALEKIVNVRLSA 87

Query: 174 AQPKNVAKQSSDSKYIKYKPSQQSAAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAX 233
           AQPKNV KQ++D+KYIKYKPSQQSAAFNSGAKERVIRMVEM VDPLEPPKFKHKRVPKA 
Sbjct: 88  AQPKNVPKQNTDAKYIKYKPSQQSAAFNSGAKERVIRMVEMAVDPLEPPKFKHKRVPKAS 147

Query: 234 XXXXXXXXXXXXXXXTVKDQQDWKIP 259
                          TVKDQQDWKIP
Sbjct: 148 GSPPVPVMHSPPRPVTVKDQQDWKIP 173