Miyakogusa Predicted Gene
- Lj3g3v3513690.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3513690.1 tr|G7JPH8|G7JPH8_MEDTR Photosystem II
stability/assembly factor HCF136 OS=Medicago truncatula
GN=MTR,87.63,0,seg,NULL; Oligoxyloglucan reducing end-specific
cellobiohydrolase,NULL; SUBFAMILY NOT NAMED,NULL; FA,CUFF.45963.1
(392 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma12g03020.1 605 e-173
Glyma11g10710.2 548 e-156
Glyma11g10710.1 548 e-156
Glyma14g23900.1 106 3e-23
Glyma06g35990.1 75 9e-14
Glyma01g00280.1 75 1e-13
Glyma14g10990.1 60 5e-09
Glyma10g06970.1 59 7e-09
Glyma04g30670.1 56 7e-08
>Glyma12g03020.1
Length = 393
Score = 605 bits (1559), Expect = e-173, Method: Compositional matrix adjust.
Identities = 306/396 (77%), Positives = 328/396 (82%), Gaps = 7/396 (1%)
Query: 1 MATLQFTFTDXXXXXXXXXXXXXXXXXXXXXXXFVVKASF---DISRT-RRQXXXXXXXX 56
MATL+ TF+D +VKAS D SR+ RR+
Sbjct: 1 MATLRLTFSDSTTLFRPSLPSTRTFSRNRS---LIVKASSSEDDFSRSSRRRFIAETAAL 57
Query: 57 XXXXXXXXXRSDEALAEWERVYLPIDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGG 116
RS++AL+EWERVYLPIDPGVVLLDIAFVP+DPNHGFLLGTRQT+LETKDGG
Sbjct: 58 SVSLPQLTARSEDALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGG 117
Query: 117 NTWGPRSIPSAEDEDFNYRFNSISFRGKEGWIVGKPNILLYTSDAGESWGRIPLSAQLPG 176
NTW PRSIPSAEDEDFNYRFNSISF+GKEGWIVGKP+ILLYTSDAG+SW RIPLSA+LPG
Sbjct: 118 NTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPSILLYTSDAGDSWERIPLSAELPG 177
Query: 177 DMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTG 236
DMVYIKATG+KSAEMVTDEGAIYVT+NRGYNW+AAVQETVSATLNRTVSSGISGASYYTG
Sbjct: 178 DMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTG 237
Query: 237 TFNTVNRSPDGNYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADXXXXXXXX 296
TFNTVNRSPDG YVAVSSRGNFYLTWEPGQ +WQPHNRAVARRIQNMGWRAD
Sbjct: 238 TFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVR 297
Query: 297 XXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGVLLRTNNGGKSWVR 356
SKG G+TEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSG+LLRT NGGKSW+R
Sbjct: 298 GGGLYLSKGKGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIR 357
Query: 357 DKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 392
DKAADNIAANLYSVKFID+KKGFVLGNDGVLLRYLG
Sbjct: 358 DKAADNIAANLYSVKFIDEKKGFVLGNDGVLLRYLG 393
>Glyma11g10710.2
Length = 381
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 282/396 (71%), Positives = 307/396 (77%), Gaps = 19/396 (4%)
Query: 1 MATLQFTFTDXXXXXXXXXXXXXXXXXXXXXXXFVVKASFDISRT----RRQXXXXXXXX 56
MATLQFTFTD +VKAS S RR+
Sbjct: 1 MATLQFTFTDSTTLFRPSLPSTRTFSRNRS---LIVKASSSSSDDFSKSRRRFIAETAAL 57
Query: 57 XXXXXXXXXRSDEALAEWERVYLPIDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGG 116
R+++AL+EWERVYLPIDPGVVLLDIAFVP+DPNHGFLLGTRQT+LETKDGG
Sbjct: 58 SVSLPQLAARAEDALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGG 117
Query: 117 NTWGPRSIPSAEDEDFNYRFNSISFRGKEGWIVGKPNILLYTSDAGESWGRIPLSAQLPG 176
NTW PRSIPSAEDEDFNYRFNSISF+GKEGWIVGKP ILLYTSDAG+SW RIPLSA+LPG
Sbjct: 118 NTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGDSWERIPLSAELPG 177
Query: 177 DMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTG 236
DMVYIKATG+KSAEMVTDEGAIYVT+NRGYNW+AAVQETVSATLNRTVSSGISGASYYTG
Sbjct: 178 DMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTG 237
Query: 237 TFNTVNRSPDGNYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADXXXXXXXX 296
TFNTVNRSPDG YVAVSSRGNFYLTWEP + P + + R++ ++
Sbjct: 238 TFNTVNRSPDGRYVAVSSRGNFYLTWEPDCFTYYPLSHLLMRKVLSL------------I 285
Query: 297 XXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGVLLRTNNGGKSWVR 356
+TEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSG+LLRT NGGKSW+R
Sbjct: 286 KHLSCIHFPCVLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIR 345
Query: 357 DKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 392
DKAADNIAANLYSVKFID+KKGFVLGNDGVLLRYLG
Sbjct: 346 DKAADNIAANLYSVKFIDEKKGFVLGNDGVLLRYLG 381
>Glyma11g10710.1
Length = 381
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 282/396 (71%), Positives = 307/396 (77%), Gaps = 19/396 (4%)
Query: 1 MATLQFTFTDXXXXXXXXXXXXXXXXXXXXXXXFVVKASFDISRT----RRQXXXXXXXX 56
MATLQFTFTD +VKAS S RR+
Sbjct: 1 MATLQFTFTDSTTLFRPSLPSTRTFSRNRS---LIVKASSSSSDDFSKSRRRFIAETAAL 57
Query: 57 XXXXXXXXXRSDEALAEWERVYLPIDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGG 116
R+++AL+EWERVYLPIDPGVVLLDIAFVP+DPNHGFLLGTRQT+LETKDGG
Sbjct: 58 SVSLPQLAARAEDALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGG 117
Query: 117 NTWGPRSIPSAEDEDFNYRFNSISFRGKEGWIVGKPNILLYTSDAGESWGRIPLSAQLPG 176
NTW PRSIPSAEDEDFNYRFNSISF+GKEGWIVGKP ILLYTSDAG+SW RIPLSA+LPG
Sbjct: 118 NTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGDSWERIPLSAELPG 177
Query: 177 DMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTG 236
DMVYIKATG+KSAEMVTDEGAIYVT+NRGYNW+AAVQETVSATLNRTVSSGISGASYYTG
Sbjct: 178 DMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTG 237
Query: 237 TFNTVNRSPDGNYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADXXXXXXXX 296
TFNTVNRSPDG YVAVSSRGNFYLTWEP + P + + R++ ++
Sbjct: 238 TFNTVNRSPDGRYVAVSSRGNFYLTWEPDCFTYYPLSHLLMRKVLSL------------I 285
Query: 297 XXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGVLLRTNNGGKSWVR 356
+TEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSG+LLRT NGGKSW+R
Sbjct: 286 KHLSCIHFPCVLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIR 345
Query: 357 DKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 392
DKAADNIAANLYSVKFID+KKGFVLGNDGVLLRYLG
Sbjct: 346 DKAADNIAANLYSVKFIDEKKGFVLGNDGVLLRYLG 381
>Glyma14g23900.1
Length = 68
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 59/77 (76%), Gaps = 11/77 (14%)
Query: 102 LLGTRQTLLETKDGGNTWGPRSIPSAEDEDFNYRFNSISFRGKEGWIVGKPNILLYTSDA 161
LLGTRQT+LET DGGNT P SIPSAEDEDFNY+FNS SF+GKEGWIV K +ILL
Sbjct: 3 LLGTRQTILETNDGGNTQAPCSIPSAEDEDFNYQFNSTSFKGKEGWIVRKSSILL----- 57
Query: 162 GESWGRIPLSAQLPGDM 178
IPLSA+LPGDM
Sbjct: 58 ------IPLSAELPGDM 68
>Glyma06g35990.1
Length = 187
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 165 WGRIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRT- 223
W + + +V IK G+KSA+MVTDEGAIYV +NRGYNW+A VQETVSATLN
Sbjct: 69 WVSVFFHILIDNHVVCIKVIGEKSAKMVTDEGAIYVIANRGYNWRAIVQETVSATLNSMK 128
Query: 224 VSSGISGASYYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNM 283
V G G G + +N YV +SS P N++V RR N
Sbjct: 129 VLPGKVGKDPVYGILSLINTQ---VYVYLSSNST------PPHFIASEGNKSVTRR--NE 177
Query: 284 GWR 286
W+
Sbjct: 178 RWK 180
>Glyma01g00280.1
Length = 180
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 37/43 (86%)
Query: 224 VSSGISGASYYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQ 266
VS+GISGASY TGTFNTV+ SPDG YV VSSRGNFYLTWE G
Sbjct: 96 VSTGISGASYCTGTFNTVDCSPDGRYVLVSSRGNFYLTWESGH 138
>Glyma14g10990.1
Length = 74
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 224 VSSGISGASYYTGTFNTVNRSPDGNYVAV 252
VS+GISGASYYTGTFNTVNRSPDG YV V
Sbjct: 2 VSTGISGASYYTGTFNTVNRSPDGRYVVV 30
>Glyma10g06970.1
Length = 73
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/30 (86%), Positives = 27/30 (90%)
Query: 223 TVSSGISGASYYTGTFNTVNRSPDGNYVAV 252
TVS+GISGASYYTGTFN VNRSPDG YV V
Sbjct: 1 TVSTGISGASYYTGTFNIVNRSPDGRYVVV 30
>Glyma04g30670.1
Length = 126
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 226 SGISGASYYTGTFNTVNRSPDGNYV 250
SGISGASYYTGTFNTVNRSPDG YV
Sbjct: 50 SGISGASYYTGTFNTVNRSPDGRYV 74