Miyakogusa Predicted Gene

Lj3g3v3510270.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3510270.1 tr|C1N998|C1N998_MICPC XRCC2 DNA recombinase
OS=Micromonas pusilla (strain CCMP1545) GN=XRCC2 PE=4
S,32.14,0.000000000003,no description,NULL; P-loop containing
nucleoside triphosphate hydrolases,NULL; seg,NULL; X-RAY
REPA,gene.g50924.t1.1
         (220 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g03290.2                                                       226   1e-59
Glyma12g03290.1                                                       226   1e-59
Glyma11g11090.1                                                       224   8e-59
Glyma11g11090.2                                                       159   2e-39

>Glyma12g03290.2 
          Length = 310

 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/223 (57%), Positives = 145/223 (65%), Gaps = 59/223 (26%)

Query: 24  AGNVLELLGPSPSAKTHILIHVSNHFSPSFIAIPQFHSILQFQVAISCILPKHWKGIHYG 83
            GNVLEL+GPSPSAKTHILIH                       AI+ +LPK      +G
Sbjct: 40  VGNVLELVGPSPSAKTHILIHA----------------------AITSVLPKR-----HG 72

Query: 84  GFDHAVLFLDLDCRFDILRFSQILIHRITQPRHQGEEAGENYDKALYDMCMTRFLYVRCS 143
           G DH VLFLDLD RFD+ RFSQ+LIHRIT          ++YDK LYD+CM RFLYVRC 
Sbjct: 73  GLDHLVLFLDLDSRFDVTRFSQLLIHRITL------HGTDSYDKTLYDLCMARFLYVRCY 126

Query: 144 DSFEFLQTLKTLHRRLEREKEVH-----LLMID---------------------RKKLFL 177
           DSFEFL TL+TLH RLE+EKEVH     LLMID                     +KKLFL
Sbjct: 127 DSFEFLHTLRTLHCRLEKEKEVHGVGVHLLMIDSIGAFHWMDRASMFLSQRENRKKKLFL 186

Query: 178 QSVSEAVVQDIKKLLQVHPMLVIATKSVIFGNRYSKAAIEVKG 220
           Q+VSEAVVQ+IKKLLQVHPML+IATKSVIFGNRYS A+ EVKG
Sbjct: 187 QTVSEAVVQNIKKLLQVHPMLIIATKSVIFGNRYSTASNEVKG 229


>Glyma12g03290.1 
          Length = 310

 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/223 (57%), Positives = 145/223 (65%), Gaps = 59/223 (26%)

Query: 24  AGNVLELLGPSPSAKTHILIHVSNHFSPSFIAIPQFHSILQFQVAISCILPKHWKGIHYG 83
            GNVLEL+GPSPSAKTHILIH                       AI+ +LPK      +G
Sbjct: 40  VGNVLELVGPSPSAKTHILIHA----------------------AITSVLPKR-----HG 72

Query: 84  GFDHAVLFLDLDCRFDILRFSQILIHRITQPRHQGEEAGENYDKALYDMCMTRFLYVRCS 143
           G DH VLFLDLD RFD+ RFSQ+LIHRIT          ++YDK LYD+CM RFLYVRC 
Sbjct: 73  GLDHLVLFLDLDSRFDVTRFSQLLIHRITL------HGTDSYDKTLYDLCMARFLYVRCY 126

Query: 144 DSFEFLQTLKTLHRRLEREKEVH-----LLMID---------------------RKKLFL 177
           DSFEFL TL+TLH RLE+EKEVH     LLMID                     +KKLFL
Sbjct: 127 DSFEFLHTLRTLHCRLEKEKEVHGVGVHLLMIDSIGAFHWMDRASMFLSQRENRKKKLFL 186

Query: 178 QSVSEAVVQDIKKLLQVHPMLVIATKSVIFGNRYSKAAIEVKG 220
           Q+VSEAVVQ+IKKLLQVHPML+IATKSVIFGNRYS A+ EVKG
Sbjct: 187 QTVSEAVVQNIKKLLQVHPMLIIATKSVIFGNRYSTASNEVKG 229


>Glyma11g11090.1 
          Length = 312

 Score =  224 bits (570), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 145/221 (65%), Gaps = 59/221 (26%)

Query: 25  GNVLELLGPSPSAKTHILIHVSNHFSPSFIAIPQFHSILQFQVAISCILPKHWKGIHYGG 84
           GNV+EL+GPSPSAKTHILIH                       AI+ +LPK      YGG
Sbjct: 43  GNVVELVGPSPSAKTHILIHA----------------------AITSVLPKC-----YGG 75

Query: 85  FDHAVLFLDLDCRFDILRFSQILIHRITQPRHQGEEAGENYDKALYDMCMTRFLYVRCSD 144
            DH VLFLDLDCRFDI RFSQ+LIHRITQ         ++YDK LY +CM RFLYVRC D
Sbjct: 76  LDHLVLFLDLDCRFDIARFSQLLIHRITQ------HGTDSYDKTLYALCMARFLYVRCYD 129

Query: 145 SFEFLQTLKTLHRRLEREKEVH-----LLMID---------------------RKKLFLQ 178
           SFEFL TL+TLH RLE+EKEVH     LLMID                     +KKLFLQ
Sbjct: 130 SFEFLHTLRTLHCRLEKEKEVHGVGVHLLMIDSIGAFHWMDRASMFLSQRENSKKKLFLQ 189

Query: 179 SVSEAVVQDIKKLLQVHPMLVIATKSVIFGNRYSKAAIEVK 219
           ++SEAVVQ+I+KLLQVHPML+IATKSV+FGNRYS A+ +VK
Sbjct: 190 TMSEAVVQNIRKLLQVHPMLIIATKSVVFGNRYSTASNDVK 230


>Glyma11g11090.2 
          Length = 264

 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 99/152 (65%), Gaps = 38/152 (25%)

Query: 25  GNVLELLGPSPSAKTHILIHVSNHFSPSFIAIPQFHSILQFQVAISCILPKHWKGIHYGG 84
           GNV+EL+GPSPSAKTHILIH                       AI+ +LPK      YGG
Sbjct: 43  GNVVELVGPSPSAKTHILIHA----------------------AITSVLPKC-----YGG 75

Query: 85  FDHAVLFLDLDCRFDILRFSQILIHRITQPRHQGEEAGENYDKALYDMCMTRFLYVRCSD 144
            DH VLFLDLDCRFDI RFSQ+LIHRITQ         ++YDK LY +CM RFLYVRC D
Sbjct: 76  LDHLVLFLDLDCRFDIARFSQLLIHRITQ------HGTDSYDKTLYALCMARFLYVRCYD 129

Query: 145 SFEFLQTLKTLHRRLEREKE-----VHLLMID 171
           SFEFL TL+TLH RLE+EKE     VHLLMID
Sbjct: 130 SFEFLHTLRTLHCRLEKEKEVHGVGVHLLMID 161