Miyakogusa Predicted Gene

Lj3g3v3386740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3386740.1 tr|C1MIJ3|C1MIJ3_MICPC Predicted protein
(Fragment) OS=Micromonas pusilla (strain CCMP1545)
GN=MICPU,52.13,2e-19,SUBFAMILY NOT NAMED,NULL; NADH-UBIQUINONE
OXIDOREDUCTASE B22 SUBUNIT,NULL; Complex1_LYR,Complex 1
LY,CUFF.45788.1
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g01000.2                                                       207   2e-54
Glyma04g01000.1                                                       207   2e-54
Glyma06g01030.1                                                       182   6e-47
Glyma04g01000.3                                                       106   6e-24

>Glyma04g01000.2 
          Length = 115

 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/113 (87%), Positives = 104/113 (92%)

Query: 2   SVTAYFARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDAANLRDRFEQNKHVEDLDTI 61
           S  AY ARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDA+NLR+RFE+N+HVED DTI
Sbjct: 3   STAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVEDPDTI 62

Query: 62  DRLIDDAEAHYNKFRHPDPYIVPWAPGGSKFCRNPAPPPGIEIVYNYGREDND 114
           DRLI DAEA YNK+RHPDPYIVPWAPGGSKF RNP PP GIEIVYNYGREDND
Sbjct: 63  DRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREDND 115


>Glyma04g01000.1 
          Length = 115

 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/113 (87%), Positives = 104/113 (92%)

Query: 2   SVTAYFARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDAANLRDRFEQNKHVEDLDTI 61
           S  AY ARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDA+NLR+RFE+N+HVED DTI
Sbjct: 3   STAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVEDPDTI 62

Query: 62  DRLIDDAEAHYNKFRHPDPYIVPWAPGGSKFCRNPAPPPGIEIVYNYGREDND 114
           DRLI DAEA YNK+RHPDPYIVPWAPGGSKF RNP PP GIEIVYNYGREDND
Sbjct: 63  DRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREDND 115


>Glyma06g01030.1 
          Length = 122

 Score =  182 bits (463), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 94/107 (87%), Gaps = 1/107 (0%)

Query: 2   SVTAYFARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDAANLRDRFEQNKHVEDLDTI 61
           S  AY ARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDA+NLR+RFE+N+HVED DTI
Sbjct: 3   STAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVEDPDTI 62

Query: 62  DRLIDDAEAHYNKFRHPDPYIVPWAPGGSKFCRNPAPPPGIEIVYNY 108
           DRLI DAEA YNK+RHPDPYIVPWAPGGSKF RNP PP G+   Y Y
Sbjct: 63  DRLITDAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGVS-CYGY 108


>Glyma04g01000.3 
          Length = 87

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 60/85 (70%), Gaps = 2/85 (2%)

Query: 2  SVTAYFARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDAANLRDRFEQNKHVEDLDTI 61
          S  AY ARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDA+NLR+RFE+N+HV      
Sbjct: 3  STAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVVRFPLF 62

Query: 62 DRLIDDAEAHYNKFR--HPDPYIVP 84
            L     A    FR  HP  Y VP
Sbjct: 63 TSLPFQIIASLTWFRSTHPLSYFVP 87