Miyakogusa Predicted Gene

Lj3g3v3374680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3374680.1 Non Chatacterized Hit- tr|D8U3B6|D8U3B6_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,54,3e-19,SUBFAMILY NOT NAMED,NULL; MICROFIBRIL-ASSOCIATED
PROTEIN,Micro-fibrillar-associated protein 1, C-ter,CUFF.45726.1
         (113 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g11430.1                                                       103   5e-23
Glyma05g28420.1                                                       102   8e-23

>Glyma08g11430.1 
          Length = 440

 Score =  103 bits (256), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/86 (63%), Positives = 61/86 (70%), Gaps = 11/86 (12%)

Query: 20  WRFMQRYYHCGAFFQDQLDT---------IMLRDFSAPTGQDKMDKTILPSVMQVKRFGL 70
           WRFMQ+YYH GAFFQ++ D          I  RDFSAPTG+DKMDKTILP VMQVK FG 
Sbjct: 321 WRFMQKYYHKGAFFQNESDDRAATVGSDGIFARDFSAPTGEDKMDKTILPKVMQVKHFGR 380

Query: 71  RGRSKWTHLINEDTTHHRTNPSWTCN 96
            GR+KWTHL+NEDTT    N  WT N
Sbjct: 381 SGRTKWTHLVNEDTTDW--NNPWTYN 404


>Glyma05g28420.1 
          Length = 436

 Score =  102 bits (255), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/86 (63%), Positives = 61/86 (70%), Gaps = 11/86 (12%)

Query: 20  WRFMQRYYHCGAFFQDQLDT---------IMLRDFSAPTGQDKMDKTILPSVMQVKRFGL 70
           WRFMQ+YYH GAFFQ++ D          I  RDFSAPTG+DKMDKTILP VMQVK FG 
Sbjct: 320 WRFMQKYYHKGAFFQNESDDRAATVGSDGIFARDFSAPTGEDKMDKTILPKVMQVKHFGR 379

Query: 71  RGRSKWTHLINEDTTHHRTNPSWTCN 96
            GR+KWTHL+NEDTT    N  WT N
Sbjct: 380 SGRTKWTHLVNEDTTDW--NNPWTYN 403