Miyakogusa Predicted Gene

Lj3g3v3360960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3360960.1 Non Chatacterized Hit- tr|D7LBF2|D7LBF2_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,88,3e-19,seg,NULL; PROTEIN RER1,Retrieval of early ER protein
Rer1; Rer1,Retrieval of early ER protein
Rer1,NODE_16275_length_817_cov_327.631592.path2.1
         (65 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g01400.1                                                        89   7e-19
Glyma06g01410.2                                                        89   7e-19
Glyma06g01410.1                                                        89   7e-19
Glyma04g01370.2                                                        89   8e-19
Glyma04g01370.1                                                        89   8e-19
Glyma04g01360.1                                                        88   2e-18
Glyma17g18430.1                                                        82   2e-16
Glyma01g39640.1                                                        81   3e-16
Glyma05g20940.1                                                        80   4e-16
Glyma11g05620.1                                                        80   6e-16

>Glyma06g01400.1 
          Length = 194

 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/45 (91%), Positives = 43/45 (95%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 45
           MTFFS+FDVPVFWPILLCYW VLFVLTMRRQ+AHMIKYKYIP NL
Sbjct: 130 MTFFSLFDVPVFWPILLCYWFVLFVLTMRRQVAHMIKYKYIPFNL 174


>Glyma06g01410.2 
          Length = 198

 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 47/65 (72%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLXXXXXXXXXXXXXXX 60
           MTFFS+FDVPVFWPILLCYW+VLFVLTMRRQ+AHM+KYKYIP NL               
Sbjct: 134 MTFFSMFDVPVFWPILLCYWVVLFVLTMRRQVAHMMKYKYIPFNLGKQKYSGKKSSASSS 193

Query: 61  XXRAD 65
             RAD
Sbjct: 194 GSRAD 198


>Glyma06g01410.1 
          Length = 198

 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 47/65 (72%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLXXXXXXXXXXXXXXX 60
           MTFFS+FDVPVFWPILLCYW+VLFVLTMRRQ+AHM+KYKYIP NL               
Sbjct: 134 MTFFSMFDVPVFWPILLCYWVVLFVLTMRRQVAHMMKYKYIPFNLGKQKYSGKKSSASSS 193

Query: 61  XXRAD 65
             RAD
Sbjct: 194 GSRAD 198


>Glyma04g01370.2 
          Length = 194

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 47/65 (72%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLXXXXXXXXXXXXXXX 60
           MTFFS+FDVPVFWPILLCYW+VLFVLTMRRQ+AHM+KYKYIP NL               
Sbjct: 130 MTFFSMFDVPVFWPILLCYWVVLFVLTMRRQVAHMMKYKYIPFNLGKQKYSGKKSSASSS 189

Query: 61  XXRAD 65
             RAD
Sbjct: 190 GSRAD 194


>Glyma04g01370.1 
          Length = 194

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 47/65 (72%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLXXXXXXXXXXXXXXX 60
           MTFFS+FDVPVFWPILLCYW+VLFVLTMRRQ+AHM+KYKYIP NL               
Sbjct: 130 MTFFSMFDVPVFWPILLCYWVVLFVLTMRRQVAHMMKYKYIPFNLGKQKYSGKKSSASSS 189

Query: 61  XXRAD 65
             RAD
Sbjct: 190 GSRAD 194


>Glyma04g01360.1 
          Length = 196

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 46/65 (70%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLXXXXXXXXXXXXXXX 60
           MTFFS+FDVPVFWPILLCYW VLFVLTMRRQ+AHM+KYKYIP NL               
Sbjct: 132 MTFFSLFDVPVFWPILLCYWFVLFVLTMRRQVAHMMKYKYIPFNLGKQKYSGKKSSASSS 191

Query: 61  XXRAD 65
             RAD
Sbjct: 192 GSRAD 196


>Glyma17g18430.1 
          Length = 197

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 41/44 (93%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTFFSVFDVPVFWPILL YW+VLF LTMRRQI+HMIKYKY+P +
Sbjct: 131 MTFFSVFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYKYLPFS 174


>Glyma01g39640.1 
          Length = 191

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTFFS FDVPVFWPILL YW+VLF LTMRRQI+HMIKYKY+P +
Sbjct: 128 MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFS 171


>Glyma05g20940.1 
          Length = 198

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTFFS FDVPVFWPILL YW+VLF LTMRRQI+HMIKYKY+P +
Sbjct: 134 MTFFSAFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYKYLPFS 177


>Glyma11g05620.1 
          Length = 191

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTFFS FDVPVFWPILL YW+VLF LTMRRQI+HMIKYKY+P +
Sbjct: 128 MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFS 171