Miyakogusa Predicted Gene

Lj3g3v3237860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3237860.1 Non Chatacterized Hit- tr|I3SNZ2|I3SNZ2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.28,0,S4
RNA-binding domain,RNA-binding S4 domain; U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN PROTEIN IMP3,NULL;,CUFF.45490.1
         (140 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g30110.1                                                       269   7e-73
Glyma10g37720.1                                                       269   7e-73
Glyma16g06220.1                                                       250   3e-67
Glyma19g25640.1                                                       179   1e-45
Glyma20g30110.2                                                       115   1e-26
Glyma17g31220.1                                                        61   4e-10
Glyma06g20540.1                                                        55   2e-08
Glyma04g33900.1                                                        55   2e-08
Glyma17g10710.1                                                        54   5e-08
Glyma05g01180.1                                                        54   5e-08

>Glyma20g30110.1 
          Length = 182

 Score =  269 bits (687), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/138 (93%), Positives = 133/138 (96%)

Query: 3   RYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVSSF 62
           +YS LC MVQKLVNILKQMDPKDP RVDMTDKLLEKLYNMGVIPTRQSIT CE LTVSSF
Sbjct: 45  KYSGLCHMVQKLVNILKQMDPKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSF 104

Query: 63  CRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKI 122
           CRRRLSTVLVRLKFAEHLKEAVTYIEQGH+RVGPETVTDPAFLVTRNMEDFVTWVDSSKI
Sbjct: 105 CRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDSSKI 164

Query: 123 KRKVLKYNDKLDDYDIMN 140
           KRKVL+YNDKLDDYD+MN
Sbjct: 165 KRKVLQYNDKLDDYDLMN 182


>Glyma10g37720.1 
          Length = 182

 Score =  269 bits (687), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/138 (93%), Positives = 133/138 (96%)

Query: 3   RYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVSSF 62
           +YS LC MVQKLVNILKQMDPKDP RVDMTDKLLEKLYNMGVIPTRQSIT CE LTVSSF
Sbjct: 45  KYSGLCHMVQKLVNILKQMDPKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSF 104

Query: 63  CRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKI 122
           CRRRLSTVLVRLKFAEHLKEAVTYIEQGH+RVGPETVTDPAFLVTRNMEDFVTWVDSSKI
Sbjct: 105 CRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDSSKI 164

Query: 123 KRKVLKYNDKLDDYDIMN 140
           KRKVL+YNDKLDDYD+MN
Sbjct: 165 KRKVLQYNDKLDDYDLMN 182


>Glyma16g06220.1 
          Length = 180

 Score =  250 bits (638), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/137 (88%), Positives = 127/137 (92%)

Query: 3   RYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVSSF 62
           +YS LC MVQKLVNILKQMD KDP R+DMTDKLLEKLYNMGVIPTRQSI  C+ LTVSSF
Sbjct: 44  KYSGLCHMVQKLVNILKQMDQKDPFRIDMTDKLLEKLYNMGVIPTRQSIMLCKRLTVSSF 103

Query: 63  CRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKI 122
           CR RLSTVLVRLKFAEHLKEAVTYIEQGH+RVGPETVTDPAFLVTRNMEDFVT VDS KI
Sbjct: 104 CRHRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTLVDSFKI 163

Query: 123 KRKVLKYNDKLDDYDIM 139
           KRKVL+YNDKLDDYD+M
Sbjct: 164 KRKVLQYNDKLDDYDLM 180


>Glyma19g25640.1 
          Length = 121

 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 102/136 (75%), Gaps = 24/136 (17%)

Query: 1   MNRYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVS 60
           MNRYS LC MVQKLVNILKQMDPKDP R+DM DKLLEKL         QSI  CE LT+S
Sbjct: 9   MNRYSGLCHMVQKLVNILKQMDPKDPFRIDMIDKLLEKL---------QSIMLCERLTIS 59

Query: 61  SFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSS 120
           SFC+RRLS V +RLKFAEHLKEAVTYIE   +RVGP+T TDPAF+VTRNMEDF       
Sbjct: 60  SFCKRRLSIVFLRLKFAEHLKEAVTYIE---IRVGPKTATDPAFVVTRNMEDF------- 109

Query: 121 KIKRKVLKYNDKLDDY 136
                VL+YNDKLDDY
Sbjct: 110 -----VLQYNDKLDDY 120


>Glyma20g30110.2 
          Length = 112

 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 56/61 (91%)

Query: 3   RYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVSSF 62
           +YS LC MVQKLVNILKQMDPKDP RVDMTDKLLEKLYNMGVIPTRQSIT CE LTVSSF
Sbjct: 45  KYSGLCHMVQKLVNILKQMDPKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSF 104

Query: 63  C 63
           C
Sbjct: 105 C 105


>Glyma17g31220.1 
          Length = 71

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 32/37 (86%)

Query: 3  RYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKL 39
          +YS LC MVQ+LVNIL QMDP+DP  VDMTD+LLEKL
Sbjct: 35 KYSGLCHMVQQLVNILTQMDPEDPFWVDMTDELLEKL 71


>Glyma06g20540.1 
          Length = 197

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL +++  G++  T+  +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I+Q H+RVG + V  P+FLV
Sbjct: 124 IHHARVLIKQRHIRVGRQVVNIPSFLV 150


>Glyma04g33900.1 
          Length = 197

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL +++  G++  T+  +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I+Q H+RVG + V  P+FLV
Sbjct: 124 IHHARVLIKQRHIRVGRQVVNIPSFLV 150


>Glyma17g10710.1 
          Length = 197

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL +++  G++  T+  +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I Q H+RVG + V  P+F+V
Sbjct: 124 IHHARVLIRQRHIRVGRQVVNIPSFMV 150


>Glyma05g01180.1 
          Length = 197

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL +++  G++  T+  +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I Q H+RVG + V  P+F+V
Sbjct: 124 IHHARVLIRQRHIRVGRQVVNIPSFMV 150