Miyakogusa Predicted Gene

Lj3g3v3153010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3153010.1 Non Chatacterized Hit- tr|D8TJX3|D8TJX3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,38.36,8e-19,RECA_2,DNA recombination/repair protein RecA/RadB,
ATP-binding domain; no description,NULL; Rad51,DN,CUFF.45354.1
         (214 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g15300.1                                                       337   7e-93
Glyma11g15280.1                                                       143   1e-34
Glyma15g04920.1                                                        57   2e-08
Glyma15g27640.1                                                        50   2e-06

>Glyma11g15300.1 
          Length = 321

 Score =  337 bits (863), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 167/208 (80%), Positives = 185/208 (88%), Gaps = 2/208 (0%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL+SLE EYPL+DSNFQ+FCASH IFSVEDFLLHDLD L++F  NH TSQ LKQGIDQ
Sbjct: 1   MAPLESLEKEYPLIDSNFQSFCASHGIFSVEDFLLHDLDALLSFTDNHSTSQTLKQGIDQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           L+SIIDAL PPLL G QLL DA+RNKHVLSTGC+GIDALL GGLREGQLTELVG SSSGK
Sbjct: 61  LISIIDALHPPLLNGLQLLEDAQRNKHVLSTGCEGIDALLRGGLREGQLTELVGSSSSGK 120

Query: 121 TQVCLLSAAT-IARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGR 179
           TQ CLLSA+T +A+HKSSVIYLDTGNSFSPQRIAHFVGQS   +  NQADH  L++VL R
Sbjct: 121 TQACLLSASTVVAKHKSSVIYLDTGNSFSPQRIAHFVGQSSGHIFGNQADHM-LKKVLDR 179

Query: 180 IICYSVFDIYQMFDVLHRLKINLRSEVL 207
           IICYSVFD+YQMFDVLH+LKINLRSE++
Sbjct: 180 IICYSVFDVYQMFDVLHQLKINLRSEIV 207


>Glyma11g15280.1 
          Length = 147

 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 77/89 (86%)

Query: 35  LHDLDTLIAFASNHPTSQRLKQGIDQLLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCD 94
           LHDLD L++F  NH TSQ LKQGIDQL+SIIDAL PPLL G QLL DA+RNKHVLSTGC+
Sbjct: 40  LHDLDALLSFTDNHSTSQTLKQGIDQLISIIDALHPPLLNGLQLLEDAQRNKHVLSTGCE 99

Query: 95  GIDALLGGGLREGQLTELVGPSSSGKTQV 123
           GID LL GGLREGQLTELVG SSSG+TQV
Sbjct: 100 GIDTLLRGGLREGQLTELVGSSSSGETQV 128


>Glyma15g04920.1 
          Length = 349

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 12/142 (8%)

Query: 70  PPLLTGSQLLADAKRNKHV---LSTGCDGIDALLGGGLREGQLTELVGPSSSGKTQVCLL 126
           PP  T   LL     N+ +   LST   G+D  L GG+  G LTELVGP+  GKTQ CL 
Sbjct: 53  PPCQTALLLLEQRVLNESLAGHLSTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLK 112

Query: 127 SA--ATIARH----KSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRI 180
            +  A++  +       VIY+D  + F  +R+      S+  +   +      QE+ GRI
Sbjct: 113 LSLLASLPTNCGGLDGRVIYIDVESKFRSKRLIEIGINSFPEIFLKKGMA---QEMAGRI 169

Query: 181 ICYSVFDIYQMFDVLHRLKINL 202
           +      + +  + LH+++++L
Sbjct: 170 LILHPTSLSEFAESLHQIRVSL 191


>Glyma15g27640.1 
          Length = 414

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 87  HVLSTGCDGIDALLGGGLREGQLTELVGPSSSGKTQVCLLSAATIARHKSSVIYLDTGNS 146
               +GC  +D  LGGGL +G++ E+ GP SSGKT + L + A + +   + + +D  ++
Sbjct: 96  ETFPSGCLTLDCALGGGLPKGRIIEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 155

Query: 147 FSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRIICYS 184
           F P   +  +G   +++   Q DH  +   +   +C S
Sbjct: 156 FDPA-YSKALGVDVENLIVCQPDHGEMALEIADRMCRS 192