Miyakogusa Predicted Gene

Lj3g3v3118700.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3118700.1 Non Chatacterized Hit- tr|I1KDR3|I1KDR3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.16337
PE,84.75,5e-19,Proteasom_PSMB,26S proteasome non-ATPase regulatory
subunit 5; 26S PROTEASOME NON-ATPASE REGULATORY ,CUFF.45329.1
         (132 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g35680.2                                                       235   8e-63
Glyma06g35680.3                                                       235   1e-62
Glyma06g35680.1                                                       235   1e-62
Glyma12g26500.1                                                       170   5e-43
Glyma06g35680.4                                                       102   1e-22

>Glyma06g35680.2 
          Length = 416

 Score =  235 bits (600), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 114/134 (85%), Positives = 122/134 (91%), Gaps = 2/134 (1%)

Query: 1   MDDPSQLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVACLE 60
           MDD SQLLQAA+DF +YPG  SDDS+RDFLNRFPLP+IINALQTQ+DVPGLENTLVACLE
Sbjct: 1   MDDSSQLLQAASDFVHYPGPHSDDSSRDFLNRFPLPVIINALQTQLDVPGLENTLVACLE 60

Query: 61  SIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAH--LIAE 118
            +F TKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVT LL+NLDNDHKVAA   LI +
Sbjct: 61  RLFNTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTSLLENLDNDHKVAASACLIKD 120

Query: 119 FNIYPLLLDCLIKG 132
           FNIYPLLLDCLI G
Sbjct: 121 FNIYPLLLDCLING 134


>Glyma06g35680.3 
          Length = 523

 Score =  235 bits (599), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/134 (85%), Positives = 122/134 (91%), Gaps = 2/134 (1%)

Query: 1   MDDPSQLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVACLE 60
           MDD SQLLQAA+DF +YPG  SDDS+RDFLNRFPLP+IINALQTQ+DVPGLENTLVACLE
Sbjct: 1   MDDSSQLLQAASDFVHYPGPHSDDSSRDFLNRFPLPVIINALQTQLDVPGLENTLVACLE 60

Query: 61  SIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAH--LIAE 118
            +F TKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVT LL+NLDNDHKVAA   LI +
Sbjct: 61  RLFNTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTSLLENLDNDHKVAASACLIKD 120

Query: 119 FNIYPLLLDCLIKG 132
           FNIYPLLLDCLI G
Sbjct: 121 FNIYPLLLDCLING 134


>Glyma06g35680.1 
          Length = 525

 Score =  235 bits (599), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/134 (85%), Positives = 122/134 (91%), Gaps = 2/134 (1%)

Query: 1   MDDPSQLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVACLE 60
           MDD SQLLQAA+DF +YPG  SDDS+RDFLNRFPLP+IINALQTQ+DVPGLENTLVACLE
Sbjct: 1   MDDSSQLLQAASDFVHYPGPHSDDSSRDFLNRFPLPVIINALQTQLDVPGLENTLVACLE 60

Query: 61  SIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAH--LIAE 118
            +F TKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVT LL+NLDNDHKVAA   LI +
Sbjct: 61  RLFNTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTSLLENLDNDHKVAASACLIKD 120

Query: 119 FNIYPLLLDCLIKG 132
           FNIYPLLLDCLI G
Sbjct: 121 FNIYPLLLDCLING 134


>Glyma12g26500.1 
          Length = 114

 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 82/98 (83%), Positives = 88/98 (89%)

Query: 1  MDDPSQLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVACLE 60
          M D SQLL+AA+DFA+Y G  SDDSARDFLNRFPLP+I +ALQTQ DVPGLENTLV CLE
Sbjct: 1  MVDSSQLLEAASDFAHYTGAHSDDSARDFLNRFPLPVIFSALQTQFDVPGLENTLVTCLE 60

Query: 61 SIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTV 98
           +F TKLGASLIPQYMPFVQVGLQADSQAVRSLACKTV
Sbjct: 61 RLFNTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTV 98


>Glyma06g35680.4 
          Length = 450

 Score =  102 bits (253), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/59 (86%), Positives = 53/59 (89%), Gaps = 2/59 (3%)

Query: 76  MPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAH--LIAEFNIYPLLLDCLIKG 132
           MPFVQVGLQADSQAVRSLACKTVT LL+NLDNDHKVAA   LI +FNIYPLLLDCLI G
Sbjct: 1   MPFVQVGLQADSQAVRSLACKTVTSLLENLDNDHKVAASACLIKDFNIYPLLLDCLING 59