Miyakogusa Predicted Gene

Lj3g3v3087300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3087300.1 tr|I3SSH7|I3SSH7_LOTJA DNA-directed RNA
polymerase subunit OS=Lotus japonicus PE=3
SV=1,85.71,0.0000000000001,seg,NULL; ZF_TFIIS_2,Zinc finger,
TFIIS-type; no description,NULL; C2C2 Zinc finger,Zinc finger,
TFI,CUFF.45299.1
         (58 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g15730.1                                                        65   2e-11
Glyma18g39550.1                                                        64   3e-11

>Glyma07g15730.1 
          Length = 111

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 32/40 (80%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H KAA+ EFQTRSADEPAT+FY CLN +C+ QWRE
Sbjct: 71  CPFCGHGKAAFKEFQTRSADEPATLFYKCLNNECKKQWRE 110


>Glyma18g39550.1 
          Length = 111

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H KAA+ EFQTRSADEPAT+FY CLN  C+ QWRE
Sbjct: 71  CPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWRE 110