Miyakogusa Predicted Gene

Lj3g3v3084430.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3084430.1 Non Chatacterized Hit- tr|G3VL28|G3VL28_SARHA
Uncharacterized protein (Fragment) OS=Sarcophilus harr,51.85,1e-17,no
description,Anticodon-binding; GLYCYL-TRNA SYNTHETASE,NULL;
GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE,gene.g50285.t1.1
         (99 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g47890.1                                                       137   2e-33
Glyma18g53620.1                                                       108   2e-24

>Glyma08g47890.1 
          Length = 725

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/87 (80%), Positives = 73/87 (83%)

Query: 2   RPSKDGDKQLRVFRFPALVAPIKCTVLPLVQNHKLEEVAKLISNSLTLDGILHKIDITDT 61
           RPSK GD+QL VFRFP+LVAPIKCTV PLVQN K EEVAKLIS SLT  GI HKID T T
Sbjct: 591 RPSKAGDEQLNVFRFPSLVAPIKCTVFPLVQNQKYEEVAKLISKSLTAVGISHKIDTTGT 650

Query: 62  SIGKQYARTDELRVLFAITVDSDSSVT 88
           SIGK+YARTDEL V FAITVDS SSVT
Sbjct: 651 SIGKRYARTDELGVPFAITVDSTSSVT 677


>Glyma18g53620.1 
          Length = 555

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 70/129 (54%), Gaps = 42/129 (32%)

Query: 2   RPSKDGDKQLRVFRFPALVAPIKCTVLPLVQNHKLEEVAKLISNSLTLDGILHKIDIT-- 59
           R SK GD+QL VFRF +LVAPIKCTV PLVQN K EEVAKL S SLT  GI HKID +  
Sbjct: 381 RQSKAGDQQLNVFRFSSLVAPIKCTVFPLVQNQKYEEVAKLTSKSLTAAGISHKIDTSTI 440

Query: 60  ----------------------------------------DTSIGKQYARTDELRVLFAI 79
                                                    TSIGK+YARTDEL V FAI
Sbjct: 441 DLLVHGIMSTLLLIVCLWLVQAHTLYSLSIDLYRIIVKGCGTSIGKRYARTDELDVPFAI 500

Query: 80  TVDSDSSVT 88
           TVDS SSVT
Sbjct: 501 TVDSTSSVT 509