Miyakogusa Predicted Gene

Lj3g3v3033310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3033310.1 Non Chatacterized Hit- tr|Q8L8B0|Q8L8B0_ARATH
Putative uncharacterized protein At2g28140/F24D13.7
OS,54.55,3e-19,DUF1635,Protein of unknown function DUF1635;
seg,NULL,CUFF.45184.1
         (149 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g08590.1                                                        75   3e-14
Glyma13g39690.1                                                        62   2e-10
Glyma11g19890.1                                                        50   1e-06

>Glyma12g08590.1 
          Length = 242

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 55/116 (47%), Gaps = 18/116 (15%)

Query: 35  LISPDKPLPEKGKLLQAVMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIGS-PQP 93
           LISPDKPLPEKGKLLQAVMK                               VTI S PQP
Sbjct: 144 LISPDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESFEIPPVTIPSPPQP 203

Query: 94  QLVHQDSFNXXXXXXXXXXXXXXXXXXXXXXFSRKRVLCDGSDSPAETKYQRIVLH 149
           QL HQDSF                        SRKRV C+G+DSP + K+QRIVLH
Sbjct: 204 QLPHQDSFT-----------------SNCGRVSRKRVFCEGTDSPTQNKFQRIVLH 242


>Glyma13g39690.1 
          Length = 251

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 36  ISPDKPLPEKGKLLQAVMKXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXVTIGSPQ 92
           ++PDKPLPEKGKLLQAVMK                                   +   P 
Sbjct: 142 LTPDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESFEIPPVTIPSPPPPP 201

Query: 93  PQLVHQDSFNXXXXXXXXXXXXXXXXXXXXXXFSRKRVLCDGSDSPAETKYQRIVLH 149
            QL+HQD+F                        SRKRV CDGSDSP ETKYQR+VLH
Sbjct: 202 LQLLHQDTF-------FNKTNGSSSTTTNCGRLSRKRVFCDGSDSPTETKYQRLVLH 251


>Glyma11g19890.1 
          Length = 259

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 47/116 (40%), Gaps = 17/116 (14%)

Query: 35  LISPDKPLPEKGKLLQAVMKXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIGSPQP 93
           LIS DKPLPEKGKLLQAVMK                                     P  
Sbjct: 160 LISQDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESFEIPPVTIPSPPPQ 219

Query: 94  QLVHQDSFNXXXXXXXXXXXXXXXXXXXXXXFSRKRVLCDGSDSPAETKYQRIVLH 149
           Q +HQDSF                        SRKRV  +G+DSP + K+QRIVLH
Sbjct: 220 QQLHQDSF----------------ITSNCGRVSRKRVFFEGTDSPTQNKFQRIVLH 259