Miyakogusa Predicted Gene
- Lj3g3v3033290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3033290.1 tr|Q2PEZ1|Q2PEZ1_TRIPR DNA ligase (Fragment)
OS=Trifolium pratense PE=2 SV=1,82.68,0,coiled-coil,NULL;
DNA_LIGASE_A3,DNA ligase, ATP-dependent, central; DNA_ligase_A_M,DNA
ligase, ATP-d,CUFF.45181.1
(776 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma12g08600.1 1128 0.0
Glyma11g19880.1 1028 0.0
Glyma18g53000.1 488 e-138
Glyma02g09970.1 168 2e-41
Glyma09g06760.1 85 3e-16
Glyma02g09960.1 71 5e-12
>Glyma12g08600.1
Length = 776
Score = 1128 bits (2917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/771 (73%), Positives = 630/771 (81%), Gaps = 19/771 (2%)
Query: 2 IHFRPYLSPPFLSHHRITAVKLFSLPFL------TLPRRAMSKPPSAFDALMSGXXXXXX 55
+HFRP PF HR V++ SL +P RAMSKPPSAFDALMSG
Sbjct: 4 LHFRPCFPLPF---HRSLTVRVSSLLSFPLSLSSAVPLRAMSKPPSAFDALMSGARAAAA 60
Query: 56 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETVQPPRDSVETVQPSSEEAVETV 115
++PP +TV P E AV+
Sbjct: 61 AKKKSQSLSQSSPSSPKKRKTPPSSSSQNPS------DLKPPSPP-KTVTPQ-EGAVKPE 112
Query: 116 LQPAKKICNSSGSL--IAELKELAPRLKKKPSEFDPSTVVCWEKGKPVPFLFLCLAFDMI 173
+ + +SS S AELK+ AP+LKKKPS+FDP+++ WEKG+PVPFLFLCLAFDMI
Sbjct: 113 PLKVRHVSSSSFSQEKTAELKKQAPQLKKKPSDFDPASISAWEKGQPVPFLFLCLAFDMI 172
Query: 174 DKESGRIVITDIACNLLRTVIHATPEDLVPVVYFLANRIAPAHEGLELGIGDASIIKALA 233
+ESGRIVITDI CNLLRTV+++TPEDLV VVY ANRIAPAHEG+ELGIGDASI+KALA
Sbjct: 173 SQESGRIVITDIVCNLLRTVMYSTPEDLVKVVYLSANRIAPAHEGMELGIGDASIVKALA 232
Query: 234 ESCGRTESQIRKLNKDRGDLGLVAKECRSSQSMMRKPDALTIRKVFTIFRLIAKESGKDS 293
E+ GRTE I+ + +GDLGLVAKE RSSQ MM KP+ALTI KVF FRLIAKESGK+S
Sbjct: 233 EAYGRTEVWIKTQYQKKGDLGLVAKESRSSQPMMFKPEALTITKVFNTFRLIAKESGKES 292
Query: 294 QEKKKNHIKSLLVAATDCEPIYLIRLLQTKLRIGLAEQTLLASLGQAAVYTEEHSKPPPE 353
QEKKKNHIK+LLVAATDCEP YLIRLLQTKLRIG AE+TLLA+LGQAAVYTEEHSKPPP+
Sbjct: 293 QEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEKTLLAALGQAAVYTEEHSKPPPD 352
Query: 354 IQSPLEEAAKIVKQVYSVLPDYDKVLSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGV 413
IQSPLEEA++IVKQVYSVLPDYDK++S+LL +G+W LPK C FT GVP+GPMLSK TKGV
Sbjct: 353 IQSPLEEASEIVKQVYSVLPDYDKIISALLTEGLWMLPKKCNFTPGVPIGPMLSKATKGV 412
Query: 414 SEILNKFQDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAEWNTGKFPDVVAAVSRLKKT 473
SEILNKFQDVEFTCEYKYDGERAQIHY+ENGSVE+YSRNAE NTGKFPDVVAAVSRLKK
Sbjct: 413 SEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKP 472
Query: 474 SVSSFVLDCEVVAYDRAKQRILPFQVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQILL 533
+VSSF+LDCE+VAYDR+ Q+I FQ+LSTRARKNV + DI V VCIFAFDLLYLNGQ LL
Sbjct: 473 TVSSFILDCEIVAYDRSTQKIRSFQMLSTRARKNVEIEDITVGVCIFAFDLLYLNGQALL 532
Query: 534 QENLKTRREHLYASFEEESGYFQFATAITSNDVEEIQKFLDKAIGASSEGLIIKTLNEDA 593
QENL+ RREHLYASFEEE G+ QFAT ITSNDVEEIQ FLD+A+GAS EGLIIKTLNEDA
Sbjct: 533 QENLRVRREHLYASFEEEPGFLQFATTITSNDVEEIQNFLDQAVGASCEGLIIKTLNEDA 592
Query: 594 TYEPSKRSLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQ 653
TYEPSKRSLNWLKLKKDYMD+IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDN NEEFQ
Sbjct: 593 TYEPSKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQ 652
Query: 654 SICKIGTGFSEDVLIERSKGLQTKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTI 713
SICKIGTGFSE VL ERS L++KVIPKPKAYYR+ ETINPDVWFEASEVWEVKAADLTI
Sbjct: 653 SICKIGTGFSEAVLEERSSSLRSKVIPKPKAYYRFGETINPDVWFEASEVWEVKAADLTI 712
Query: 714 SPVYRAAVGIVDSNKGISLRFPRLLRVRPDKDPEQATSSEQVAEMYNAQKH 764
SPV+RAAVGIVD NKGISLRFPRLLRVRPDK PEQA+SSEQVAEMY AQKH
Sbjct: 713 SPVHRAAVGIVDPNKGISLRFPRLLRVRPDKAPEQASSSEQVAEMYKAQKH 763
>Glyma11g19880.1
Length = 740
Score = 1028 bits (2659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/733 (70%), Positives = 575/733 (78%), Gaps = 45/733 (6%)
Query: 34 RAMSKPPSAFDALMSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXET 93
R MSKPPSAFDALMSG +T
Sbjct: 38 RTMSKPPSAFDALMSGARAAAKKKSQSQPSPKKRKTPPSQNPSNL-------------KT 84
Query: 94 VQPPRDSVETVQPSSEEAVETVLQPAKKICNSSGSLIAELKELAPRLKKKPSEFDPSTVV 153
+ P +V+ E V+ A + +SS AELK+ P+LKKKPS+FDP+++
Sbjct: 85 LTPQEPAVK----PEEHTVKPEPLNAPPVPSSSKEKTAELKKQVPQLKKKPSDFDPASIT 140
Query: 154 CWEKGKPVPFLFLCLAFDMIDKESGRIVITDIACNLLRTVIHATPEDLVPVVYFLANRIA 213
WEKG+PVPFLFLCL FD+I +ES RIVITDI CNLLRTV+H TPEDLV VVY ANRIA
Sbjct: 141 AWEKGQPVPFLFLCLVFDIISQESKRIVITDIVCNLLRTVMHCTPEDLVKVVYLSANRIA 200
Query: 214 PAHEGLELGIGDASIIKALAESCGRTESQIRKLNKDRGDLGLVAKECRSSQSM--MRKPD 271
PAHEG+ELGIG+ASI KALAE+ G E+ I+ + +GDLGLVAKE RSSQ M M KP+
Sbjct: 201 PAHEGVELGIGEASITKALAEAYGTNEAWIKTQYQKKGDLGLVAKESRSSQPMIMMFKPE 260
Query: 272 ALTIRKVFTIFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPIYLIRLLQTKLRIGLAEQ 331
LTIRKVF FRLIAKE GK+SQEKKKNH+K+LLV+ATDCEP YLIRLLQ+KLRIG AE+
Sbjct: 261 VLTIRKVFNTFRLIAKEYGKESQEKKKNHMKALLVSATDCEPQYLIRLLQSKLRIGYAEK 320
Query: 332 TLLASLGQAAVYTEEHSKPPPEIQSPLEEAAKIVKQVYSVLPDYDKVLSSLLKDGVWKLP 391
TLLA+LGQAAVYTEEHSKPPP+IQSPLEEA+ IVKQVYSVLPDYDK++S+LL +G+W LP
Sbjct: 321 TLLAALGQAAVYTEEHSKPPPDIQSPLEEASNIVKQVYSVLPDYDKIISALLTEGLWMLP 380
Query: 392 KTCKFTLGVPVGPMLSKPTKGVSEILNKFQDVEFTCEYKYDGERAQIHYMENGSVEVYSR 451
K C FT GVP+GPMLSK TKGVSEILNKFQDVEFTCEYKYDGERAQIHY+ENGSVE+YSR
Sbjct: 381 KKCNFTPGVPIGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSR 440
Query: 452 NAEWNTGKFPDVVAAVSRLKKTSVSSFVLDCEVVAYDRAKQRILPFQVLSTRARKNVAVS 511
+AE NTGKFPDVVAAVSRLKK +VSS +LDCE+VAYDR Q I FQ LSTRARKNV +
Sbjct: 441 HAERNTGKFPDVVAAVSRLKKPTVSSLILDCEIVAYDRQTQTIHSFQALSTRARKNVEME 500
Query: 512 DIKVDVCIFAFDLLYLNGQILLQENLKTRREHLYASFEEESGYFQFATAITSNDVEEIQK 571
DIKVDVCIFAFDLLYLNGQ LLQENL+ RREHLYASFEEE G+ QFAT ITSNDVEEIQK
Sbjct: 501 DIKVDVCIFAFDLLYLNGQALLQENLRVRREHLYASFEEEPGFLQFATTITSNDVEEIQK 560
Query: 572 FLDKAIGASSEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMDNIGDSLDLVPIAAFHGRG 631
FLD+A+GAS EGLIIKTLNEDATYEP KRSLNWLKLKKDYMDNIGDSLDLVPIAAFHGRG
Sbjct: 561 FLDQAVGASCEGLIIKTLNEDATYEPLKRSLNWLKLKKDYMDNIGDSLDLVPIAAFHGRG 620
Query: 632 KRTGVYGAFLLACYDNSNEEFQSICKIGTGFSEDVLIERSKGLQTKVIPKPKAYYRYAET 691
KRTGVYGAFLLACYD+ NEEFQSICKIGTGFSE VL ERS L++KVIPKPKAYYR+ E+
Sbjct: 621 KRTGVYGAFLLACYDSDNEEFQSICKIGTGFSEAVLEERSSSLRSKVIPKPKAYYRFGES 680
Query: 692 INPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRLLRVRPDKDPEQATS 751
INPDVWFEASE GISLRFPRLLRVRPDK PEQA+S
Sbjct: 681 INPDVWFEASE--------------------------GISLRFPRLLRVRPDKSPEQASS 714
Query: 752 SEQVAEMYNAQKH 764
SEQVAEMYNAQK
Sbjct: 715 SEQVAEMYNAQKQ 727
>Glyma18g53000.1
Length = 637
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/629 (38%), Positives = 386/629 (61%), Gaps = 23/629 (3%)
Query: 155 WEKGKPVPFLFLCLAFDMIDKESGRIVITDIACNLLRTVIHATPEDLVPVVYFLANRIAP 214
W+ G+P P+L + F++++ E GRI T + CN+ R+++ +P D++P VY N+IA
Sbjct: 1 WKDGQPAPYLHIARTFNLLEGEKGRIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAA 60
Query: 215 AHEGLELGIGDASIIKALAESCGRTESQIRKLNKDRGDLGLVAKECRSSQSMMRKPDALT 274
HE EL IG + + AL E+CG +IR++ GDLG VA+ECR +Q ++ P L
Sbjct: 61 DHENKELNIGGSLVTAALEEACGTNRLKIREMFNKFGDLGDVAQECRQTQRLLAPPTPLL 120
Query: 275 IRKVFTIFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPIYLIRLLQTKLRIGLAEQTLL 334
I+ VF+ + I+ ++G S +KK I L+ + + E +L+R L LRIG +T+L
Sbjct: 121 IKDVFSALQKISVQTGSRSTSRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVL 180
Query: 335 ASLGQAAVY----TEEHSKPPPEIQSPLEEAAKIVKQVYSVLPDYDKVLSSLLKDGVWKL 390
+L A T I+ L+ + V + Y++LP+ D ++ SL+ G+
Sbjct: 181 PALAHAVAMNSCPTLHQEGTAENIKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFS 240
Query: 391 PKTCKFTLGVPVGPMLSKPTKGVSEILNKFQDVEFTCEYKYDGERAQIHYMENGSVEVYS 450
+ G+P+ PML+K T G+ + L F++ FTCEYKYDG+RAQIH + +GS+ V+S
Sbjct: 241 VSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFS 300
Query: 451 RNAEWNTGKFPDVVAAVSRLKKTSVSSFVLDCEVVAYDRAKQ-RILPFQVLSTRARKN-- 507
RN + +T +FPD++ + K S+F++D E+V DR RI+ FQ LS+R R
Sbjct: 301 RNGDESTSRFPDLIDIIKESSKPVASTFIMDAEIVGIDRKNGYRIMSFQELSSRGRGGKD 360
Query: 508 --VAVSDIKVDVCIFAFDLLYLNGQILLQENLKTRREHLYASF-EEESGYFQFA--TAIT 562
V IKVD+CIF FD+++ NG+ LL L+ RR++L F +E+ GYF++A T +
Sbjct: 361 TLVTSESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTVE 420
Query: 563 SND--------VEEIQKFLDKAIGASSEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMDN 614
++D + +I FL+ A+ +S EG+++KTL+ DA Y PSKRS WLK+K+DY++
Sbjct: 421 ADDACLTCEATLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEG 480
Query: 615 IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQSICKIGTGFSEDVLIERSKGL 674
+ D+LDLVPI A+HG G++ G Y FL+AC++ EE+QS+C++ +GFS+ IE +
Sbjct: 481 LNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKQFF 540
Query: 675 Q-TKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSNKGISLR 733
KV+ K YY+ E PD+WF VWE++ AD T+SPV+ AA+G+V ++GIS+R
Sbjct: 541 SGDKVLSKKPPYYQTREA--PDMWFCPQVVWEIRGADFTVSPVHHAAIGLVHPSRGISIR 598
Query: 734 FPRLLRVRPDKDPEQATSSEQVAEMYNAQ 762
FPR + D+ PE+ +++ + EM+++Q
Sbjct: 599 FPRFISCVSDRSPEECSTAADIGEMFHSQ 627
>Glyma02g09970.1
Length = 355
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 149/258 (57%), Gaps = 25/258 (9%)
Query: 410 TKGVSEILNKFQDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAEWNTGKFPDVVAAVSR 469
T G+ + L F++ FTCEYKYDG+RAQIH + +GS+ V+SRN +T +FPD++
Sbjct: 2 TNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSICVFSRNGGESTSRFPDLIDIFKG 61
Query: 470 LKKTSVSSFVLDCEVVAYDRAKQ-RILPFQVLSTRARKNVAVSDIKVDVCIFAFDLLYLN 528
K+ S+F++D E+V DR RI+ FQVLS+R R D VD+CIF FD+++ N
Sbjct: 62 SSKSVASTFIMDAEIVDIDRKNGYRIMSFQVLSSRRRGG---KDTLVDICIFVFDIMFAN 118
Query: 529 GQILLQENLKTRREHLYASFEE--ESGYFQFATAITSN------------DVEEIQKFLD 574
G+ +L + L + S Y+ F +A+ + + +I FL+
Sbjct: 119 GEHIL---IIGEYRWLACKMVQPMVSCYWVFLSALDESIEVDDACLTYEATLTKINAFLE 175
Query: 575 KAIGASSEGLIIKTLNEDATYEPSKRSLNWLKLKK-DYMDNIGDSLDLVPIAAFHGRGKR 633
A+ +S EG+++KTL+ DA Y PSK S WLK +K DY++ + D+L LVPI A+H G++
Sbjct: 176 DALCSSCEGILVKTLDVDAGYSPSKHSDKWLKTQKSDYVEGLNDTLYLVPIGAWHENGRK 235
Query: 634 TGVY---GAFLLACYDNS 648
G + F++ NS
Sbjct: 236 AGWWRQNNGFVICISSNS 253
>Glyma09g06760.1
Length = 995
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 146/356 (41%), Gaps = 70/356 (19%)
Query: 398 LGVPVGPMLSKPTKGVSEILNKFQDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAEWNT 457
+G V P L+K +E E E K+DG QI + +SR N
Sbjct: 79 VGKAVCPQLAKRVANATEAWKNLHGKEVVVECKFDGGCIQIR-KNRTEIHFFSRQVHMNF 137
Query: 458 GKFPDVVAAVSRLKKTSVSS-------------FVLDCEVVAYDRAKQRILPFQVLSTRA 504
+ A+S + +V +LD E++ +D + + F +A
Sbjct: 138 IDHSEYAHAMSEIIIQNVLGACNYNLEGLFDIMCILDGEMLVWDTSLKHFAEF----AKA 193
Query: 505 RKNVAVSDIK-VDVCIFAFDLLYLNGQILLQENLKTRREHLYASFEEESGYFQF------ 557
++ SD + +DV AFD+LY ++ + LK + E L G +
Sbjct: 194 ARDGPDSDRQWLDV---AFDILYFGDTSVIHQTLKEQHEILGKIVRPVKGRLEILVPNAG 250
Query: 558 ----------ATAITSNDVEEIQKFLDKAIGASSEGLIIKTLNEDATYEPSKRSLNWLKL 607
+ +++V+ +++F K I EG+++K + + +EPS S WLKL
Sbjct: 251 INSYISSGEPCWSFIAHNVDGVERFFIKTIENRDEGIVLK--DHSSKWEPSDCSGKWLKL 308
Query: 608 KKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSN-----EEFQSICKIGTGF 662
K +Y+ G LD++ I +G G+R G FL+ + + + F S C++GTG
Sbjct: 309 KPEYI-QAGSDLDVLIIGGCYGSGRRGGEVARFLVGLAERPSPNTHPKRFISFCRVGTGL 367
Query: 663 SEDVLIERSKGLQTKVIPKPKAYYR-----------YAETIN-----PDVWFEASE 702
S+D L V+ K K Y+R + + N PD+W ++ E
Sbjct: 368 SDDEL--------DAVVTKQKPYFRKYEYPKKMPPSFYQVTNHSKERPDMWVDSPE 415
>Glyma02g09960.1
Length = 724
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 137 APRLKKKPSEFDPST-VVCWEKGKPVPFLFLCLAFDMIDKESGRIVITDIACNLLRTVIH 195
A L P +++P CW G+P P+L + ++++ E G+I T + CN+ R++
Sbjct: 569 ATHLSLPPEKYNPKEHATCWRDGQPAPYLHIARTLNLLEGEKGKIKATSLLCNMFRSLSA 628
Query: 196 ATPEDLVPVVYFLANRIAPAHEGLELGIGDASIIKALAESCGRTESQIRKLNKDRGDLGL 255
+ D++P VY +I HE EL IG S++ A+ + + G
Sbjct: 629 LSLADVLPAVYLCNTKIGADHENKELNIG-GSLVTAIFGTNKVPYIILFDCFTKPVQSGD 687
Query: 256 VAKECRSSQS------MMRKPDALTIRKVFTIFRLI 285
VA+ECR + ++ P L I+ VF+ + I
Sbjct: 688 VAQECRQTHKSVVKHRLLATPTPLLIKDVFSALQKI 723