Miyakogusa Predicted Gene

Lj3g3v3033230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3033230.1 Non Chatacterized Hit- tr|D2DW84|D2DW84_PHAVU
Putative F-box family protein OS=Phaseolus vulgaris
PE,59.09,0.00002,F-box domain,F-box domain, cyclin-like; no
description,NULL; FBOX,F-box domain, cyclin-like; seg,NUL,CUFF.45177.1
         (77 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g35360.1                                                        48   2e-06
Glyma08g46590.2                                                        47   4e-06
Glyma08g46590.1                                                        47   4e-06
Glyma20g28060.1                                                        47   4e-06

>Glyma18g35360.1 
          Length = 357

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 2  LPDEIFYHILSVLPTKQAIATSVLSRRWSLLCTSV 36
          LP+E+  HILS LPTKQA+AT +LS+RW  L  SV
Sbjct: 11 LPNELLCHILSFLPTKQAVATGILSKRWGPLWRSV 45


>Glyma08g46590.2 
          Length = 380

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 2  LPDEIFYHILSVLPTKQAIATSVLSRRWSLLCTSV 36
          LPD +  HILS LPTKQ+I TS+LS+RW  L  SV
Sbjct: 8  LPDAVLCHILSFLPTKQSIVTSILSKRWKALWRSV 42


>Glyma08g46590.1 
          Length = 515

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 2   LPDEIFYHILSVLPTKQAIATSVLSRRWSLLCTSV 36
           LPD +  HILS LPTKQ+I TS+LS+RW  L  SV
Sbjct: 186 LPDAVLCHILSFLPTKQSIVTSILSKRWKALWRSV 220


>Glyma20g28060.1 
          Length = 421

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 24/28 (85%)

Query: 2  LPDEIFYHILSVLPTKQAIATSVLSRRW 29
          LP+EI  HILS+LPTK A+ TSVLSRRW
Sbjct: 6  LPNEIIQHILSLLPTKDAVKTSVLSRRW 33