Miyakogusa Predicted Gene

Lj3g3v3016620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3016620.1 tr|B9MYK7|B9MYK7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_594846 PE=4
SV=1,53.85,4e-18,DUF296,Domain of unknown function DUF296; no
description,NULL,gene.g50159.t1.1
         (140 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g07550.1                                                        51   4e-07
Glyma06g01700.2                                                        50   8e-07
Glyma06g01700.1                                                        50   8e-07
Glyma13g21430.1                                                        50   1e-06
Glyma04g01620.1                                                        48   3e-06

>Glyma10g07550.1 
          Length = 463

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)

Query: 2   KNSQLTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKR 50
           +   L+VSLA PDG V GG V   L AAGPIQ+++ +F QN     K++
Sbjct: 319 RTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMQNCCKTQKRK 367


>Glyma06g01700.2 
          Length = 355

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 6   LTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRRSNGSSNVPSMAGNP 65
           L+VSL+ PDG V GG V   LIAA P+Q++LA+F  ++   +K+ +   +  V +  G  
Sbjct: 248 LSVSLSGPDGRVLGGGVAGLLIAASPVQIVLASFVSDVRKHLKRAKKTENEKVSTAGGQS 307

Query: 66  DS 67
            S
Sbjct: 308 SS 309


>Glyma06g01700.1 
          Length = 355

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 6   LTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRRSNGSSNVPSMAGNP 65
           L+VSL+ PDG V GG V   LIAA P+Q++LA+F  ++   +K+ +   +  V +  G  
Sbjct: 248 LSVSLSGPDGRVLGGGVAGLLIAASPVQIVLASFVSDVRKHLKRAKKTENEKVSTAGGQS 307

Query: 66  DS 67
            S
Sbjct: 308 SS 309


>Glyma13g21430.1 
          Length = 445

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 2   KNSQLTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRR 51
           +   L+VSLA PDG V GG V   L AAGPIQ+++ +F QN   + +KR+
Sbjct: 306 RTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMQN-GYKAQKRK 354


>Glyma04g01620.1 
          Length = 343

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 6   LTVSLAKPDGTVFGGNVESSLIAAGPIQLILATFKQNISNQIKKRRSNGSSNVPSMAGNP 65
           L+VSL+ PDG V GG V   L+AA P+Q++LA+F  ++    K  +   ++ V   AG  
Sbjct: 236 LSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDVRKHFKHAKQMQNAKVSIAAGQS 295

Query: 66  DS 67
            S
Sbjct: 296 SS 297