Miyakogusa Predicted Gene

Lj3g3v3006550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3006550.1 tr|F2D013|F2D013_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,57.14,0.018,RNA-binding
domain, RBD,NULL; CCCH zinc finger,NULL; U2AUXFACTOR,U2 auxiliary
factor small subunit; ,NODE_63306_length_883_cov_103.347679.path2.1
         (283 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g30590.2                                                       391   e-109
Glyma12g30590.1                                                       391   e-109
Glyma03g34840.1                                                       358   3e-99
Glyma19g37530.1                                                       355   2e-98
Glyma07g20090.2                                                       337   8e-93
Glyma07g20090.1                                                       337   8e-93
Glyma20g00950.1                                                       337   1e-92
Glyma08g17310.1                                                       134   8e-32
Glyma15g39220.1                                                       127   9e-30

>Glyma12g30590.2 
          Length = 315

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/286 (72%), Positives = 227/286 (79%), Gaps = 3/286 (1%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPT+LLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVDA G PIDPRKIQ HF++FY+DLFDELSKYG +++LNVCDNLADHMVGNVY QFREEE
Sbjct: 61  GVDAHGHPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA A++NLTGRFYAG PIIVDFSPVTDFREATCRQYEE++CNRGGYCNFMHLK+ISREL
Sbjct: 121 HAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 181 RRELFG-MDNRGRHGRSRSPDRHRSNEDRSPRGHSRKYDXXXXXXXXXXXXXXXXXXXXX 239
           RR+LFG    R    RSRSP RHRS+E+RS R HSRKYD                     
Sbjct: 181 RRQLFGKSHGRHSRSRSRSPYRHRSHEERSHRSHSRKYDDRDHHHESRSRRHRSTSPRHR 240

Query: 240 XXXXXXXXXXXXXXXA--RDGSEERRARIEQWNREREEQKHESKVS 283
                          +  RDGSEERRARIEQWNRERE+Q+   KV+
Sbjct: 241 RGRSRSRSPGGRRHHSPVRDGSEERRARIEQWNREREDQEPGYKVN 286


>Glyma12g30590.1 
          Length = 315

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/286 (72%), Positives = 227/286 (79%), Gaps = 3/286 (1%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPT+LLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVDA G PIDPRKIQ HF++FY+DLFDELSKYG +++LNVCDNLADHMVGNVY QFREEE
Sbjct: 61  GVDAHGHPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA A++NLTGRFYAG PIIVDFSPVTDFREATCRQYEE++CNRGGYCNFMHLK+ISREL
Sbjct: 121 HAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 181 RRELFG-MDNRGRHGRSRSPDRHRSNEDRSPRGHSRKYDXXXXXXXXXXXXXXXXXXXXX 239
           RR+LFG    R    RSRSP RHRS+E+RS R HSRKYD                     
Sbjct: 181 RRQLFGKSHGRHSRSRSRSPYRHRSHEERSHRSHSRKYDDRDHHHESRSRRHRSTSPRHR 240

Query: 240 XXXXXXXXXXXXXXXA--RDGSEERRARIEQWNREREEQKHESKVS 283
                          +  RDGSEERRARIEQWNRERE+Q+   KV+
Sbjct: 241 RGRSRSRSPGGRRHHSPVRDGSEERRARIEQWNREREDQEPGYKVN 286


>Glyma03g34840.1 
          Length = 314

 Score =  358 bits (920), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/282 (64%), Positives = 207/282 (73%), Gaps = 7/282 (2%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPD---- 56
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTL+LSNMYQRPD    
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNMS 60

Query: 57  IVTPGVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQF 116
           I+T     Q Q +DP K+Q HFDDFY+DLF+ELSKYG +Q+LN+CDNLADHMVGNVY QF
Sbjct: 61  IITNPDQPQPQSLDPDKVQDHFDDFYEDLFEELSKYGPIQSLNICDNLADHMVGNVYVQF 120

Query: 117 REEEHAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKI 176
           REE+HAA AL NLTGRFY+G PIIVDFSPVTDFREATCRQYEE+ CNRGGYCNFMHLKKI
Sbjct: 121 REEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 180

Query: 177 SRELRRELFGMDNR--GRHG-RSRSPDRHRSNEDRSPRGHSRKYDXXXXXXXXXXXXXXX 233
           SR+LRR+LFG + R  GR G RSRSP R+R++ + S  G                     
Sbjct: 181 SRDLRRKLFGRNRRWNGRSGSRSRSPPRNRNHGENSHSGRGSGRRDFDRSHGPHGRRPRS 240

Query: 234 XXXXXXXXXXXXXXXXXXXXXARDGSEERRARIEQWNREREE 275
                                 R+ S ERRA+IEQWNRE+E+
Sbjct: 241 RSPRYRGKRSRSPVGRDRSPPIRESSAERRAKIEQWNREKEQ 282


>Glyma19g37530.1 
          Length = 314

 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/288 (63%), Positives = 209/288 (72%), Gaps = 7/288 (2%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPD---- 56
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTL+LSNMYQRPD    
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNMN 60

Query: 57  IVTPGVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQF 116
           I+T     Q Q +DP K+Q HFDDFY+DLF+ELSKYG +Q+LN+CDNLADHMVGNVY QF
Sbjct: 61  IITNPDQPQPQSLDPDKVQDHFDDFYEDLFEELSKYGPIQSLNICDNLADHMVGNVYVQF 120

Query: 117 REEEHAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKI 176
           REE+HAA AL NLTGRFY+G PIIVDFSPVTDFREATCRQYEE+ CNRGGYCNFMHLKKI
Sbjct: 121 REEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 180

Query: 177 SRELRRELFGMDNR--GRHG-RSRSPDRHRSNEDRSPRGHSRKYDXXXXXXXXXXXXXXX 233
           SR+LRR+LFG + R  GR G RS+SP R+R++ +    G                     
Sbjct: 181 SRDLRRKLFGRNRRWNGRSGSRSKSPPRNRNHGEHLHSGRGSGRRDFDRSHGHHGRRPRS 240

Query: 234 XXXXXXXXXXXXXXXXXXXXXARDGSEERRARIEQWNREREEQKHESK 281
                                 R+ S ERRA+IEQWNRE+E+ +  +K
Sbjct: 241 RSPRYRGKRSRSPVGRDRSPPIRENSAERRAKIEQWNREKEQGETSNK 288


>Glyma07g20090.2 
          Length = 271

 Score =  337 bits (864), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 173/194 (89%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PSISPTLLLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD QGQP+DPRKIQ HF+DFY+D+F EL+K+G +++LNVCDNLADHM+GNVY QFREE+
Sbjct: 61  GVDPQGQPLDPRKIQQHFEDFYEDIFTELAKFGDIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
            AA+AL  L GRFY   PII DFSPVTDFREATCRQ+EE+SCNRGGYCNFMH+K I R+L
Sbjct: 121 QAAKALHALHGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRELFGMDNRGRHG 194
           RR LFG  +RG  G
Sbjct: 181 RRRLFGRHHRGGSG 194


>Glyma07g20090.1 
          Length = 271

 Score =  337 bits (864), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 173/194 (89%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PSISPTLLLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD QGQP+DPRKIQ HF+DFY+D+F EL+K+G +++LNVCDNLADHM+GNVY QFREE+
Sbjct: 61  GVDPQGQPLDPRKIQQHFEDFYEDIFTELAKFGDIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
            AA+AL  L GRFY   PII DFSPVTDFREATCRQ+EE+SCNRGGYCNFMH+K I R+L
Sbjct: 121 QAAKALHALHGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRELFGMDNRGRHG 194
           RR LFG  +RG  G
Sbjct: 181 RRRLFGRHHRGGSG 194


>Glyma20g00950.1 
          Length = 268

 Score =  337 bits (863), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 152/194 (78%), Positives = 173/194 (89%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PSISPTLLLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD QGQ +DPRKIQ HF+DFY+D+F EL+K+G +++LNVCDNLADHM+GNVY QFREE+
Sbjct: 61  GVDPQGQTLDPRKIQQHFEDFYEDIFTELAKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
            AA+AL  L GRFY   PII DFSPVTDFREATCRQ+EE+SCNRGGYCNFMH+K I R+L
Sbjct: 121 QAAKALHALRGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGYCNFMHVKLIGRDL 180

Query: 181 RRELFGMDNRGRHG 194
           RR LFG ++RG  G
Sbjct: 181 RRRLFGRNHRGGSG 194


>Glyma08g17310.1 
          Length = 561

 Score =  134 bits (338), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P +       +G  
Sbjct: 186 FGTEQDKAHCPFHLKTGACRFGIRCSRVHFYPDKSSTLLIKNMYSGPGLACDQDQDEGLE 245

Query: 69  IDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEEHAAEALKN 128
               +++  F++FY+D+  E  K+G +    VC N + H+ GNVY Q++  + A  A   
Sbjct: 246 YTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKSLDSALLAYNT 305

Query: 129 LTGRFYAGNPIIVDFSPVTDFREATCRQYEED---SCNRGGYCNFMH 172
           + GR++AG  +   F  +T ++ A C +Y +    +C+ G  CNF+H
Sbjct: 306 VNGRYFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGTTCNFIH 352


>Glyma15g39220.1 
          Length = 530

 Score =  127 bits (320), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 3/167 (1%)

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTPGVDAQGQP 68
           FGTE+D+ +CPF+ K GAC  G RCSR+H  P  S T L+ NMY  P +       +G  
Sbjct: 168 FGTEQDKAHCPFHLKTGACCFGIRCSRVHFYPDKSSTFLIKNMYNGPGLACDRDQDEGLE 227

Query: 69  IDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEEHAAEALKN 128
               +++  F++FY+D+  E  K+G +    VC N + H  GNVY Q++  + A  A  +
Sbjct: 228 YKDEEVERCFEEFYEDVHTEFLKFGEVVNFKVCKNGSFHWRGNVYVQYKSLDSALLAYNS 287

Query: 129 LTGRFYAGNPIIVDFSPVTDFREATCRQYEED---SCNRGGYCNFMH 172
           + GR++AG  +   F  +T ++ A C +Y +    +C+ G  CNF+H
Sbjct: 288 VNGRYFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGTACNFIH 334