Miyakogusa Predicted Gene

Lj3g3v2996010.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2996010.1 tr|B6UEL5|B6UEL5_MAIZE COX VIIa-like protein
OS=Zea mays PE=4 SV=1,82.69,3e-18,COX7a,Cytochrome c oxidase, subunit
VIIa,CUFF.45145.1
         (67 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g30750.1                                                       122   8e-29
Glyma12g09170.1                                                       119   8e-28
Glyma11g19300.1                                                       118   2e-27
Glyma13g39530.1                                                        90   5e-19
Glyma12g09170.2                                                        88   2e-18

>Glyma12g30750.1 
          Length = 67

 Score =  122 bits (306), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query: 1  MSEAPFTPREKLFEKQKYFQNIQKHTYLKGRYDKITSVAIPIALAASSLFMIGRGIYNMS 60
          M+E PF PREKL EKQKYFQNI KHTYLKG YDKITSVAIP+ALAA+SL++IGRGIYNMS
Sbjct: 1  MTEPPFRPREKLIEKQKYFQNIHKHTYLKGPYDKITSVAIPLALAATSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 67
          HGIGKKE
Sbjct: 61 HGIGKKE 67


>Glyma12g09170.1 
          Length = 67

 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/67 (83%), Positives = 62/67 (92%)

Query: 1  MSEAPFTPREKLFEKQKYFQNIQKHTYLKGRYDKITSVAIPIALAASSLFMIGRGIYNMS 60
          MSEAPF PREKL EKQKYFQ+I +HTYLKG  DKITSVAIP+ALAA+S++MIGRGIYNMS
Sbjct: 1  MSEAPFRPREKLAEKQKYFQSIHRHTYLKGPMDKITSVAIPLALAATSIYMIGRGIYNMS 60

Query: 61 HGIGKKE 67
          HGIGKKE
Sbjct: 61 HGIGKKE 67


>Glyma11g19300.1 
          Length = 67

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 62/67 (92%)

Query: 1  MSEAPFTPREKLFEKQKYFQNIQKHTYLKGRYDKITSVAIPIALAASSLFMIGRGIYNMS 60
          MSE+PF PREKL EKQKYFQ+I +HTYLKG  DKITSVAIP+ALAA+S++MIGRGIYNMS
Sbjct: 1  MSESPFRPREKLAEKQKYFQSIHRHTYLKGPMDKITSVAIPLALAATSIYMIGRGIYNMS 60

Query: 61 HGIGKKE 67
          HGIGKKE
Sbjct: 61 HGIGKKE 67


>Glyma13g39530.1 
          Length = 58

 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 48/58 (82%)

Query: 1  MSEAPFTPREKLFEKQKYFQNIQKHTYLKGRYDKITSVAIPIALAASSLFMIGRGIYN 58
          MSE PF PREKL +KQKYF NI KHTYLKG YDKITSVAIP+ALAASSL++    +++
Sbjct: 1  MSEPPFRPREKLIQKQKYFHNIHKHTYLKGPYDKITSVAIPLALAASSLYLTVSNLFD 58


>Glyma12g09170.2 
          Length = 58

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 47/52 (90%)

Query: 1  MSEAPFTPREKLFEKQKYFQNIQKHTYLKGRYDKITSVAIPIALAASSLFMI 52
          MSEAPF PREKL EKQKYFQ+I +HTYLKG  DKITSVAIP+ALAA+S++MI
Sbjct: 1  MSEAPFRPREKLAEKQKYFQSIHRHTYLKGPMDKITSVAIPLALAATSIYMI 52