Miyakogusa Predicted Gene

Lj3g3v2995620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2995620.1 Non Chatacterized Hit- tr|I3SQX6|I3SQX6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,64.86,2e-17,seg,NULL,CUFF.45099.1
         (282 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g19370.1                                                       322   4e-88

>Glyma11g19370.1 
          Length = 270

 Score =  322 bits (824), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 168/262 (64%), Positives = 194/262 (74%), Gaps = 12/262 (4%)

Query: 18  FNVILVSSTPHHNQTNYCENIRTQQTPFXXXXXXXXXXXXXXITLCRSQNLYFRTSLGLF 77
           FN+IL SS P HN  N+C NI+TQ TPF              ITLC SQNLY RTSLGLF
Sbjct: 18  FNIILCSSIPQHNHANFCGNIKTQ-TPFLDSNSSMLDN----ITLCISQNLYLRTSLGLF 72

Query: 78  HVSSVDYNVRLLTITHSSCSSSLQYVSPLEITAGFPSPPEPNSLILFNCLSRSEPISPFM 137
           HVSS+D N RLLTITHSSCSS LQYVSPL +T+GFPSPPEPNSL+LFNC SR +   P M
Sbjct: 73  HVSSLDNNGRLLTITHSSCSS-LQYVSPLAVTSGFPSPPEPNSLVLFNCSSRRDTTLPIM 131

Query: 138 QDLCRDLYTCGDAASSSSKTQDHEKEKHPYSCLVVEDLRKVEKDFHPKHWNCSHYSWVHR 197
           Q+ C DLY CG A S  S+ Q+H +  HPYSC  VEDL+KV+KDFHP+H NCSHYSWVHR
Sbjct: 132 QN-CSDLYKCGGAGSPPSRPQEHLE--HPYSCFFVEDLQKVDKDFHPEHLNCSHYSWVHR 188

Query: 198 NSSDGGDDERYKVGMRITFDIP-ASDICKGCENSNGSCGAGLKCLCHPKECTDKVISKTG 256
           ++SDGG D+ YKVG R++ DIP   +IC+GCE  NG+CGAGL CLCHPKEC DKVISK G
Sbjct: 189 STSDGGHDQGYKVGTRLSVDIPRVPEICQGCEKPNGNCGAGLNCLCHPKECKDKVISKAG 248

Query: 257 SIKLTGGVFYSLLFSFIGSAAL 278
            IK T   F+S+L S IGS  +
Sbjct: 249 -IKSTASAFFSML-SLIGSVTV 268