Miyakogusa Predicted Gene
- Lj3g3v2990310.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2990310.1 tr|B9HPW4|B9HPW4_POPTR NAC domain protein,
IPR003441 OS=Populus trichocarpa GN=NAC113 PE=4 SV=1,65.28,2e-19,NAC
domain,No apical meristem (NAM) protein; FAMILY NOT NAMED,NULL; NAM,No
apical meristem (NAM) pro,CUFF.45078.1
(94 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma12g31150.1 114 3e-26
Glyma13g39160.1 110 4e-25
Glyma11g18770.1 106 6e-24
Glyma12g09670.1 104 2e-23
Glyma03g35570.1 78 2e-15
Glyma07g31220.1 50 7e-07
Glyma05g32850.1 49 1e-06
Glyma04g38560.1 49 2e-06
Glyma06g16440.1 48 2e-06
Glyma11g10230.1 48 3e-06
Glyma06g16440.2 47 3e-06
Glyma17g00650.1 47 6e-06
Glyma07g40140.1 46 7e-06
Glyma19g38210.1 46 8e-06
Glyma10g34130.1 46 1e-05
>Glyma12g31150.1
Length = 244
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
MVFYKGKAP+GRKTKWKM+EY+AI+ S+ QS+TA P+LR EFSLCRVYVISGSFRSFDRR
Sbjct: 113 MVFYKGKAPTGRKTKWKMHEYKAIEHSD-QSNTAPPKLRHEFSLCRVYVISGSFRSFDRR 171
Query: 61 PLKNERVESRLVHDEAG 77
PL RVE R+V + G
Sbjct: 172 PLDMPRVELRVVDGDRG 188
>Glyma13g39160.1
Length = 253
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
MVFYKGKAP+GRKTKWKM++Y+AI+ S+ QS+TA P+LR EFSLCRVYVISGSFRSFDRR
Sbjct: 113 MVFYKGKAPTGRKTKWKMHQYKAIEHSH-QSNTAPPKLRHEFSLCRVYVISGSFRSFDRR 171
Query: 61 PLKNERVESRLVHD 74
PL+ R+E R+ D
Sbjct: 172 PLEMPRIELRVDGD 185
>Glyma11g18770.1
Length = 246
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 59/74 (79%), Gaps = 4/74 (5%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
MVFYKGKAP GRKTKWKMNEYRAI + N +TPQLR EFSLCRVYVISGSFR+FDRR
Sbjct: 115 MVFYKGKAPMGRKTKWKMNEYRAIHIPNQ----STPQLRWEFSLCRVYVISGSFRAFDRR 170
Query: 61 PLKNERVESRLVHD 74
PL+ + ESR D
Sbjct: 171 PLEKDGSESRAKVD 184
>Glyma12g09670.1
Length = 248
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 61/79 (77%), Gaps = 2/79 (2%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
MVFYKGKAP G KTKWKMNEYRAI V + QS+ AT L EFSLCRVYVISGSFR+FDRR
Sbjct: 118 MVFYKGKAPMGTKTKWKMNEYRAIHVPS-QSTPATLHLTCEFSLCRVYVISGSFRAFDRR 176
Query: 61 PLKNERVESRLVHDEAGNF 79
PL+ E ESR VH NF
Sbjct: 177 PLEKEGAESR-VHRIENNF 194
>Glyma03g35570.1
Length = 257
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAI--QVSNNQSSTATPQLRREFSLCRVYVISGSFRSFD 58
MVFY G+AP+G KT WKMNEY AI + S++ S+ A P LR+EFSLCRVY S R+FD
Sbjct: 113 MVFYSGRAPNGTKTDWKMNEYSAIKGEPSSSISNKAVPTLRKEFSLCRVYKKSKCLRAFD 172
Query: 59 RRP 61
RRP
Sbjct: 173 RRP 175
>Glyma07g31220.1
Length = 334
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
+VFY GK P G KT W M+EYR + S N SS+ P L ++ LCR+Y S + + R
Sbjct: 116 LVFYGGKPPKGVKTNWIMHEYRLVDDSFN-SSSKPPPLLDDWVLCRIYKKSNN-TTLPRP 173
Query: 61 PLKNERVE 68
P+ E
Sbjct: 174 PMMEHEEE 181
>Glyma05g32850.1
Length = 298
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQV--SNNQSSTATPQLR-REFSLCRVYVISGSFRSF 57
+VFY GKAP G KT W M+EYR V S ++ +T T LR ++ LCR+Y G +
Sbjct: 109 LVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNTTTNNLRLDDWVLCRIYNKKGKIEKY 168
Query: 58 DRRPLKNERVESRLVHDE 75
+ + +++V ++L +E
Sbjct: 169 NGVAVVDQKV-AKLSEEE 185
>Glyma04g38560.1
Length = 291
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLR-REFSLCRVYVISGSFRSFD 58
+VFY GKAP G KT W M+EYR V + S LR ++ LCR+Y G ++
Sbjct: 109 LVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKKNNNLRLDDWVLCRIYNKKGKIEKYN 167
>Glyma06g16440.1
Length = 295
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLR-REFSLCRVYVISGSFRSFD 58
+VFY GKAP G KT W M+EYR V + S LR ++ LCR+Y G ++
Sbjct: 109 LVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNNLRLDDWVLCRIYNKKGKIEKYN 167
>Glyma11g10230.1
Length = 302
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISGSFRSFDRR 60
+VFY+G+AP G KT W MNEYR + +N +L +E LC++Y + S + ++R
Sbjct: 124 LVFYQGRAPRGCKTDWVMNEYR---LPDNC------KLPKEIVLCKIYRKATSLKVLEQR 174
Query: 61 -PLKNERVESRLVHDEAGNFP 80
L+ ER + ++V + + P
Sbjct: 175 AALEEEREKKQMVDNSPASPP 195
>Glyma06g16440.2
Length = 265
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLR-REFSLCRVYVISGSFRSFD 58
+VFY GKAP G KT W M+EYR V + S LR ++ LCR+Y G ++
Sbjct: 79 LVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNNLRLDDWVLCRIYNKKGKIEKYN 137
>Glyma17g00650.1
Length = 312
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISG 52
+VFY GKAP G +T W MNEYR Q + A E SLCRVY +G
Sbjct: 106 LVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKA------EISLCRVYKRAG 151
>Glyma07g40140.1
Length = 389
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVYVISG 52
+VFY GKAP G +T W MNEYR Q + A E SLCRVY +G
Sbjct: 135 LVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKA------EISLCRVYKRAG 180
>Glyma19g38210.1
Length = 155
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTA 34
MVFY G+AP+G KT WKMNEY AI+ S++ ++
Sbjct: 113 MVFYSGRAPNGTKTDWKMNEYTAIKTSSSSPTSV 146
>Glyma10g34130.1
Length = 465
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 1 MVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVY 48
+VF+ G+AP G++T W M+EYR ++ ++ + + Q + + LCRV+
Sbjct: 138 LVFHSGRAPDGKRTNWVMHEYRLVEEELERAGSGSSQPQDAYVLCRVF 185