Miyakogusa Predicted Gene

Lj3g3v2987100.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2987100.2 Non Chatacterized Hit- tr|I1P100|I1P100_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,38.46,3e-18,F-box domain,F-box domain, cyclin-like; F-box,F-box
domain, cyclin-like; SUBFAMILY NOT NAMED,NULL; F,CUFF.45067.2
         (194 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g18680.1                                                       166   2e-41
Glyma12g31200.1                                                       161   3e-40
Glyma13g39100.1                                                       159   1e-39
Glyma10g08760.1                                                       105   2e-23
Glyma19g38290.1                                                        96   3e-20
Glyma03g35660.1                                                        80   1e-15
Glyma10g03100.1                                                        51   9e-07

>Glyma11g18680.1 
          Length = 341

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 103/167 (61%), Gaps = 4/167 (2%)

Query: 26  SFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTT 85
           S +  +H DII  HILTRLDG                C  +DLW++I  ATWPSL  P  
Sbjct: 21  SSLATLHSDIIHAHILTRLDGATLASAASVSSLMHRLCTQDDLWREISTATWPSLQNPIA 80

Query: 86  SHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRV 145
            HVIS  P G+RSIFSDAFPSLH++                  ISAVD+YY G+P+FSRV
Sbjct: 81  RHVISAIPGGYRSIFSDAFPSLHNS----SFRRHRPPPPTPELISAVDMYYQGKPVFSRV 136

Query: 146 HRTETEKNWFLTSPLCVEMLEPNEVVPAPVRFAGKYEKWMRHLEESL 192
            RTET+KNWF  SPL ++ L+  E++P  V+FA K E+W++HLEE+L
Sbjct: 137 IRTETQKNWFFASPLWIDALQHKELIPTTVKFARKDEEWLKHLEENL 183


>Glyma12g31200.1 
          Length = 331

 Score =  161 bits (408), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 104/171 (60%), Gaps = 3/171 (1%)

Query: 26  SFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTT 85
           S IT VHPDI  +HIL RLDG                C +  LW+ ICAATWPSL  P  
Sbjct: 12  SDITTVHPDIFQSHILNRLDGPTLASAASATSHLRGLCTEHHLWRNICAATWPSLNDPLA 71

Query: 86  SHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRV 145
           +  I+TFPA HRSIFSD+FPSLHH+                  ISAVDIYY G+P+FSRV
Sbjct: 72  AATIATFPATHRSIFSDSFPSLHHS-PPNPIPTQPPTPPPPELISAVDIYYKGKPVFSRV 130

Query: 146 HRTETEKNWFLTSPLCVEMLEPNEVVPAPVRFAGKYE--KWMRHLEESLRL 194
            RTET K WFL SPL V++L+P EVVP P++FA   +  + + HL E+L L
Sbjct: 131 IRTETHKGWFLCSPLWVDLLDPTEVVPTPLKFAQTNDEIELLNHLVENLAL 181


>Glyma13g39100.1 
          Length = 326

 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 105/171 (61%), Gaps = 4/171 (2%)

Query: 26  SFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTT 85
           S IT VHPDI  +HIL RLDG                C +  LW+ I AATWPSL  P  
Sbjct: 8   SDITTVHPDIFQSHILNRLDGPTLASAASSTSHLRRLCTEHHLWRNISAATWPSLNDPLA 67

Query: 86  SHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRV 145
           + +I+TFPA HRSIFSD+FPSLHH+                  ISAVD+YY G+P+FSRV
Sbjct: 68  AAIITTFPARHRSIFSDSFPSLHHS--PPNLNPTPPPPPPPELISAVDLYYKGKPVFSRV 125

Query: 146 HRTETEKNWFLTSPLCVEMLEPNEVVPAPVRFAGKYE--KWMRHLEESLRL 194
            +TET K WFL SPL V++L+ NEVVP P++FA   +  K + HL+E+L L
Sbjct: 126 IKTETHKGWFLCSPLWVDLLDRNEVVPTPLKFAQTNDENKLLNHLDENLTL 176


>Glyma10g08760.1 
          Length = 330

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 89/181 (49%), Gaps = 4/181 (2%)

Query: 14  GTDQDVAALSRLSFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKIC 73
           G D + A  S LS   A+HPDII THILTRL G                 + + LW   C
Sbjct: 6   GDDPNAAESSALS---AIHPDIIQTHILTRLPGPALASATATCSQLHSLSSHDPLWLNAC 62

Query: 74  AATWPSLTAPTTSHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVD 133
            ATWPS   P   HVI TFP   RS F+D+FPS H                    ISAVD
Sbjct: 63  HATWPSTLTPRVRHVIDTFPNAARSFFADSFPSSHSLSSNKTTFSSNDPNRTPELISAVD 122

Query: 134 IYYNGEPMFSRVHRTETEKNWFLTSPLCVEMLEPNEVVPAPVRFAGKYEKWMRHLEESLR 193
           +++N   +FS+V  TET   WF  SP  +++++P   V   V++    E   R LEESLR
Sbjct: 123 LFHNESLLFSKVVETETVTGWFRCSPFRIDLVDPKHAVKTGVKYPVD-EDTCRELEESLR 181

Query: 194 L 194
           L
Sbjct: 182 L 182


>Glyma19g38290.1 
          Length = 335

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 28  ITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTSH 87
           ITAVHPDII THILT LDG                 A E LW+ IC +TWPS ++P   H
Sbjct: 21  ITAVHPDIIQTHILTCLDGPSLASVASTCSQLHALSAREPLWENICHSTWPSTSSPRVRH 80

Query: 88  VISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRVHR 147
           V+STFP         +      +                  ISAVDI++    + SRV  
Sbjct: 81  VMSTFPRA-------SLSFFSDSFPSFAAAREGSSSRAPELISAVDIFHRRRAVLSRVVE 133

Query: 148 TETEKNWFLTSPLCVEMLEPNEVVPAPVRFAGKYEKWMRHLEESLRL 194
           TETE +WF  SP  +++L+  E V   + +  + E+    L E LRL
Sbjct: 134 TETESDWFRCSPFRIDVLDQKEAVATAMEYP-RSEEACEILGEDLRL 179


>Glyma03g35660.1 
          Length = 353

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 71/160 (44%), Gaps = 7/160 (4%)

Query: 18  DVAALSRLSFITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATW 77
           D A+    + I AVHPDII THILT LDG                   E LW+ IC +TW
Sbjct: 12  DEASGGGATTIFAVHPDIIQTHILTCLDGRALASVASTCSQLHALSDHEPLWENICHSTW 71

Query: 78  PSLTAPTTSHVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYN 137
           PS  +P   HVISTFP         +      +                  ISAVDI++ 
Sbjct: 72  PSTNSPRVRHVISTFPCA-------SRSFFSDSFPSFAAREGSNIDRAPELISAVDIFHR 124

Query: 138 GEPMFSRVHRTETEKNWFLTSPLCVEMLEPNEVVPAPVRF 177
              + SRV  TETE  WF  SP  +++L+  E V   + +
Sbjct: 125 RRVVLSRVVETETESGWFRCSPFRIDVLDQKEAVATAMEY 164


>Glyma10g03100.1 
          Length = 346

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 28  ITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTSH 87
           I +++ D+ L  IL RLDG                  +E LW+ +C++ WPS        
Sbjct: 9   IASLNSDL-LYDILRRLDGPTLASAACTCASFSSISKEESLWENVCSSVWPSTNREDVKS 67

Query: 88  VISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRVHR 147
           +IS+   G R  ++D FP + +                   +S VDI +  +P+ S+V  
Sbjct: 68  LISS-TGGFRKFYADCFPLIINKE--------VGDISPSDFVSIVDIRFKEKPICSKVLC 118

Query: 148 TETEKN----WFLTSPLCVEML 165
                N    WF   P  +++L
Sbjct: 119 GIPNANGYDEWFYNCPFRIDLL 140