Miyakogusa Predicted Gene

Lj3g3v2949660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2949660.1 tr|G7JH90|G7JH90_MEDTR 5'-3' exoribonuclease
OS=Medicago truncatula GN=MTR_4g051920 PE=4 SV=1,57.54,0,5'->3'
EXORIBONUCLEASE,NULL,CUFF.45031.1
         (431 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g09870.1                                                       384   e-107
Glyma14g40510.1                                                       266   4e-71
Glyma17g37650.1                                                       264   1e-70
Glyma20g37260.2                                                       243   4e-64
Glyma20g37260.1                                                       238   8e-63
Glyma19g43160.1                                                       231   1e-60
Glyma03g40500.1                                                       225   9e-59
Glyma11g18390.1                                                       154   3e-37
Glyma19g08980.1                                                        54   3e-07
Glyma11g25630.1                                                        52   1e-06

>Glyma12g09870.1 
          Length = 475

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/287 (66%), Positives = 230/287 (80%), Gaps = 8/287 (2%)

Query: 1   MKDKGDLFKSGEFRIDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWV 60
           +++K DLFKSG+F IDKIKLGT G+K+RY+K KFSVEG  D E KRK++V+KYTEGL+WV
Sbjct: 195 IREKCDLFKSGDFLIDKIKLGTPGFKERYFKAKFSVEGPTDIECKRKEIVQKYTEGLVWV 254

Query: 61  LQYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYAL 120
           LQYYFS VASW+WFYP+HYGPFASDLKGMGQV+  FEKGVPF P DQLLSVLPP S++AL
Sbjct: 255 LQYYFSSVASWTWFYPFHYGPFASDLKGMGQVRVKFEKGVPFLPLDQLLSVLPPASSHAL 314

Query: 121 PKSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLS 180
           PK+YS+LM+DE S+I  +YPQDFEVDTEGKR+MWQ IC L WI+++ L++ETRE++N LS
Sbjct: 315 PKAYSQLMLDEQSRIFDFYPQDFEVDTEGKRFMWQGICILSWIDDKRLVAETRELKNELS 374

Query: 181 QNEKIRNSVKVDSLFVRSSSNLSTKICSLSTDNNQ-SKLETNI-SDRIGGIISLCLEDVD 238
           +NE IRNSVK DSL VRS+S L+ K  SLS D N   KLET + SD IGGI+SLC  D  
Sbjct: 375 ENEAIRNSVKADSLLVRSASKLAEKFGSLSLDTNLPCKLETRMSSDGIGGILSLC--DEF 432

Query: 239 VERPNLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTK 285
           VE+P L  +I D K+ED  LCVYYELPAG  S  +  LLS V +P K
Sbjct: 433 VEKPCL--DISDNKKEDSVLCVYYELPAG--SNHIPGLLSDVKLPEK 475


>Glyma14g40510.1 
          Length = 1075

 Score =  266 bits (679), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 138/319 (43%), Positives = 189/319 (59%), Gaps = 13/319 (4%)

Query: 1   MKDKGDLFKSGEFRIDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWV 60
           +++K D+F S     DKIKLG  G+K+RYY+EKFS +   + E  RKDVV KYTEGL WV
Sbjct: 526 LREKSDVFNSKNAEEDKIKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWV 585

Query: 61  LQYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYAL 120
           + YY+ GV SW+WFYPYHY PFASDLKG+G++  +F+ G PF PFDQLL V P  S++AL
Sbjct: 586 MHYYYEGVCSWNWFYPYHYAPFASDLKGLGELDISFKLGTPFKPFDQLLGVFPAASSHAL 645

Query: 121 PKSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLS 180
           P+ Y +LM D +S I+ +YP DFEVD  GKR+ WQ I KLP+I+E  LL+E ++I+N L+
Sbjct: 646 PEPYRRLMTDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEVRLLAEVQKIENLLT 705

Query: 181 QNEKIRNSVKVDSLFVRSSSNLSTKICSLSTDNN----------QSKLETNISDRIGGII 230
            +EK RN++  D +FV S   LS  I +L               + K+    S  + G I
Sbjct: 706 PDEKRRNAIMFDLIFVNSCHPLSACISTLDNKCKNMPNSERAVVKEKINPKESGGMNGYI 765

Query: 231 SLCLEDVDVERPNLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYES 290
           SLC  +         +   +   ++H +C  Y LP      T      GV  P K +   
Sbjct: 766 SLCGGEPCPPIFRSPIASMEDIMDNHVICAIYRLPDAHKHIT--RPPQGVKFPKKIVEIG 823

Query: 291 EIK-ETVLWHEKQMYQTHN 308
           ++K E VLWHE    + H+
Sbjct: 824 DLKPEPVLWHEDSGRRHHS 842


>Glyma17g37650.1 
          Length = 1039

 Score =  264 bits (675), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/321 (43%), Positives = 188/321 (58%), Gaps = 19/321 (5%)

Query: 1   MKDKGDLFKSGEFRIDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWV 60
           +++K D+F S     DKIKLG  G+K+RYY EKFS +   + E  RKDVV KYTEGL WV
Sbjct: 526 LREKSDVFNSKNAEEDKIKLGEPGWKERYYDEKFSAKTPEELEAIRKDVVLKYTEGLCWV 585

Query: 61  LQYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYAL 120
           + YY+ GV SW+WFYPYHY PFASDLKG+G++  +F+ G PF P+DQLL V P  S++AL
Sbjct: 586 MHYYYEGVCSWNWFYPYHYAPFASDLKGLGELDISFKLGTPFKPYDQLLGVFPAASSHAL 645

Query: 121 PKSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLS 180
           P+ Y +LM D  S I+ +YP DFEVD  GKR+ WQ I KLP+I+E  LL+E ++I+N L+
Sbjct: 646 PEPYRRLMTDPSSPIIDFYPVDFEVDMNGKRFAWQGIAKLPFIDEVRLLAEVQKIENLLT 705

Query: 181 QNEKIRNSVKVDSLFVRSSSNLSTKICSLSTDNN----------QSKLETNISDRIGGII 230
             EK RN++  D LFV S   LS  I +L               + K+    S  + G I
Sbjct: 706 PEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCKNMPNSERAVVKEKINPKESGGMNGYI 765

Query: 231 SLCLEDVD---VERPNLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTI 287
           SLC  +        P   ME      ++H +C  Y LP   + T +     GV  P K +
Sbjct: 766 SLCGGEPCPPIFRSPVASME---DIMDNHVICAIYRLP--DAHTHITRPPQGVKFPKKIV 820

Query: 288 YESEIK-ETVLWHEKQMYQTH 307
              ++K E VLWHE    + H
Sbjct: 821 GIEDLKPEPVLWHEDSGRRHH 841


>Glyma20g37260.2 
          Length = 931

 Score =  243 bits (619), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 130/310 (41%), Positives = 180/310 (58%), Gaps = 17/310 (5%)

Query: 15  IDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWVLQYYFSGVASWSWF 74
           +DK+KLG  GYK+RYY EKF V    + +K +KD+V KY EGL WV +YY+ GV SW W+
Sbjct: 432 LDKVKLGEPGYKERYYVEKFGVSNLEEIDKIKKDIVLKYVEGLCWVCRYYYQGVCSWKWY 491

Query: 75  YPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYALPKSYSKLMIDEDSK 134
           YPYHY PFASD K +  ++ NF  G PF PFDQL+  LP  S+ ALPK Y  LM D  S 
Sbjct: 492 YPYHYAPFASDFKDLPDLEINFFPGEPFKPFDQLMGTLPASSSSALPKKYRDLMSDPSSP 551

Query: 135 ILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQNEKIRNSVKVDSL 194
           I H+YP DFE+D  GKR+ WQ + KLP+I+E++LL+ TR I++ L++ E++RNSV +D L
Sbjct: 552 IFHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRRIEDTLTEEEQLRNSVMLDLL 611

Query: 195 FVRSSSNLSTKICSLSTDNNQ--------SKLETNISDRIGGIISLCLEDV---DVERPN 243
           +V  + NL+  I S     +Q          ++TN S  + G + LC  +V    +  P 
Sbjct: 612 YVNRAHNLAAHILSYYHVCSQLPPHERCVQPIDTNASGGMNGYLWLCERNVFSSVISSPI 671

Query: 244 LGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYESEIKE-TVLWHEKQ 302
            G++  +  Q    L + +  P       +     GV IP K +   +IK   VLWHE  
Sbjct: 672 SGLQDIEYNQ---VLNITFLNPR--RHDHIPKPPDGVVIPKKVLKAIDIKPFPVLWHEDN 726

Query: 303 MYQTHNRFER 312
           + Q     ER
Sbjct: 727 IGQRQQARER 736


>Glyma20g37260.1 
          Length = 932

 Score =  238 bits (607), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 130/311 (41%), Positives = 180/311 (57%), Gaps = 18/311 (5%)

Query: 15  IDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWVLQYYFSGVASWSWF 74
           +DK+KLG  GYK+RYY EKF V    + +K +KD+V KY EGL WV +YY+ GV SW W+
Sbjct: 432 LDKVKLGEPGYKERYYVEKFGVSNLEEIDKIKKDIVLKYVEGLCWVCRYYYQGVCSWKWY 491

Query: 75  YPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYALPKSYSKLMIDEDSK 134
           YPYHY PFASD K +  ++ NF  G PF PFDQL+  LP  S+ ALPK Y  LM D  S 
Sbjct: 492 YPYHYAPFASDFKDLPDLEINFFPGEPFKPFDQLMGTLPASSSSALPKKYRDLMSDPSSP 551

Query: 135 ILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQNEKIRNSVKVDSL 194
           I H+YP DFE+D  GKR+ WQ + KLP+I+E++LL+ TR I++ L++ E++RNSV +D L
Sbjct: 552 IFHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRRIEDTLTEEEQLRNSVMLDLL 611

Query: 195 FVRSSSNLSTKICSLSTDNNQ--------SKLETNISD-RIGGIISLCLEDV---DVERP 242
           +V  + NL+  I S     +Q          ++TN S   + G + LC  +V    +  P
Sbjct: 612 YVNRAHNLAAHILSYYHVCSQLPPHERCVQPIDTNASSGGMNGYLWLCERNVFSSVISSP 671

Query: 243 NLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYESEIKE-TVLWHEK 301
             G++  +  Q    L + +  P       +     GV IP K +   +IK   VLWHE 
Sbjct: 672 ISGLQDIEYNQ---VLNITFLNPR--RHDHIPKPPDGVVIPKKVLKAIDIKPFPVLWHED 726

Query: 302 QMYQTHNRFER 312
            + Q     ER
Sbjct: 727 NIGQRQQARER 737


>Glyma19g43160.1 
          Length = 957

 Score =  231 bits (589), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/333 (40%), Positives = 189/333 (56%), Gaps = 23/333 (6%)

Query: 2   KDKGDLFKSGEFR---IDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLL 58
           + +GD+   GE R   +DK+KLG  GYK+RYY EKF        +K +KD V KY EGL 
Sbjct: 423 RARGDM--PGEPRASVLDKVKLGEPGYKERYYAEKFGALDPEKIDKIKKDTVLKYVEGLC 480

Query: 59  WVLQYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAY 118
           WV +YY+ GV SW W+YPYHY PFASDLK +  ++  F  G PF PFDQL+  LP  S+ 
Sbjct: 481 WVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSS 540

Query: 119 ALPKSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNG 178
           ALPK Y  LMID  S IL +YP DFE+D  GKR+ WQ + KLP+I+E++LLS T +++  
Sbjct: 541 ALPKKYRDLMIDPSSSILQFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLSATSKLEAT 600

Query: 179 LSQNEKIRNSVKVDSLFVRSSSNLSTKI-------CSLSTDNNQSK-LETNISDRIGGII 230
           L++ E++RNS  +D L+V S+ NL+  I       C L      ++ ++  +SD + G +
Sbjct: 601 LTEEEQLRNSKMLDLLYVSSAHNLAPHILSYYQYSCQLPLHERPAQPIDPRVSDGMNGYL 660

Query: 231 SLCLEDV---DVERPNLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTI 287
            L   +V    V  P  G++  +  Q    L + Y  P       +     GV +P K +
Sbjct: 661 WLYERNVLRTIVSSPIKGLQDIEFNQ---VLNITYLNPR--KHRHIPKAPDGVLMPKKIL 715

Query: 288 YESEIKE-TVLWHEKQMYQTHNRFERSIASSNA 319
              +IK   VLWHE+   +   R ER +  + A
Sbjct: 716 KAIDIKPFPVLWHEENSGRRQGR-ERQVHGAMA 747


>Glyma03g40500.1 
          Length = 966

 Score =  225 bits (573), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 131/322 (40%), Positives = 176/322 (54%), Gaps = 19/322 (5%)

Query: 15  IDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWVLQYYFSGVASWSWF 74
           +DK+KLG  GYK+RYY EKF        EK +KD V KY EGL WV +YY+ GV SW W+
Sbjct: 439 LDKVKLGEPGYKERYYAEKFGALDLEKIEKIKKDTVLKYVEGLCWVCRYYYQGVCSWQWY 498

Query: 75  YPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYALPKSYSKLMIDEDSK 134
           YPYHY PFASDLK +  ++  F  G PF PFDQL+  LP  S+ ALP+ Y  LMID  S 
Sbjct: 499 YPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSSALPEKYRDLMIDPSSP 558

Query: 135 ILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQNEKIRNSVKVDSL 194
           IL +YP DFE+D  GKR+ WQ + KLP+I+E++LLS T +++  L++ E++RNS  +D L
Sbjct: 559 ILQFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLSATSKLEATLTEEEQLRNSKMLDLL 618

Query: 195 FVRSSSNLSTKICSLSTDNNQSKLETNI---------SDRIGGIISLCLEDV---DVERP 242
           +V S+ NL+  I S    + Q  L             SD + G + L   +V    V  P
Sbjct: 619 YVSSAHNLAPHILSYHQYSCQLPLHERPALPIDPRASSDGMNGYLWLYERNVLRTTVSSP 678

Query: 243 NLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYESEIKE-TVLWHEK 301
             G++  +  Q    L + Y  P       +     GV +P K +   +IK   VLWHE 
Sbjct: 679 IKGLQDIEFNQ---VLNITYLNPR--KHRHIPKPPDGVLMPKKILKAIDIKPFPVLWHED 733

Query: 302 QMYQTHNRFERSIASSNATTPQ 323
              +   R ER         PQ
Sbjct: 734 NSGRRQGR-ERQQVHGAMAGPQ 754


>Glyma11g18390.1 
          Length = 755

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 127/212 (59%), Gaps = 40/212 (18%)

Query: 181 QNEKIRNSVKVDSLFVRSSSNLSTKICSLSTDNN-QSKLETNISDRIGGIISLCLEDVDV 239
           +NE IRNSVK DSLFVRS+S L+ K  SLS D N   KLET ISD IGG ISLC  D  +
Sbjct: 444 ENEAIRNSVKADSLFVRSASELAEKFGSLSLDTNPPCKLET-ISDGIGGNISLC--DEFI 500

Query: 240 ERPNLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYESEIKETVLWH 299
           E+P L  +ICD K+ED  LCVYYELPAG  S  +  LLS V +P KTI+E +I ET LWH
Sbjct: 501 EKPCL--DICDNKKEDRVLCVYYELPAG--SNHIPRLLSDVKLPEKTIFEIDIMETELWH 556

Query: 300 EKQMYQTHNRFE--------RSIASSNAT------TPQNRRSFSLNAPPEVIYKGAGVGW 345
           E Q Y  ++RFE        RS  +SN +      + Q+ RSF        +YK AGVG 
Sbjct: 557 EPQKY--YSRFERVQNQDKWRSENTSNTSRFPPNASNQHARSF--------VYKDAGVGL 606

Query: 346 GSGRGKPSNTPTMQRLNTMTNERVSPSLSPNH 377
           GSGRGK        R++ M NE V  ++   H
Sbjct: 607 GSGRGK--------RIDAMANESVPNNIRTQH 630



 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 66/130 (50%), Gaps = 39/130 (30%)

Query: 1   MKDKGDLFKSGEFRIDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWV 60
           +++K DLF+SG F  DK                                V+KYTEGL+WV
Sbjct: 385 IREKCDLFQSGNFLTDK--------------------------------VQKYTEGLVWV 412

Query: 61  LQYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYAL 120
           LQYYFS VASW+WFYP+HYGPFASDLKGMGQ        V     D L      RSA  L
Sbjct: 413 LQYYFSSVASWTWFYPFHYGPFASDLKGMGQENEAIRNSV---KADSLFV----RSASEL 465

Query: 121 PKSYSKLMID 130
            + +  L +D
Sbjct: 466 AEKFGSLSLD 475


>Glyma19g08980.1 
          Length = 42

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query: 18 IKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLW 59
          IKLG  G+K+RYY+EKFS +   + E  RKDVV KYTEGL W
Sbjct: 1  IKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCW 42


>Glyma11g25630.1 
          Length = 194

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 26/37 (70%)

Query: 41  DFEKKRKDVVEKYTEGLLWVLQYYFSGVASWSWFYPY 77
           + E  RKDVV KYTEGL WV+ YY+ G  SW+W  P+
Sbjct: 66  EIEAIRKDVVLKYTEGLCWVMHYYYEGACSWNWGVPF 102