Miyakogusa Predicted Gene
- Lj3g3v2908390.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2908390.1 Non Chatacterized Hit- tr|I1KFD3|I1KFD3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,74.07,0,DNA_pol_A_exo1,3'-5' exonuclease domain;
HRDC,Helicase/RNase D C-terminal, HRDC domain; seg,NULL;
no,CUFF.45036.1
(911 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma06g46220.1 1312 0.0
Glyma12g10530.1 959 0.0
Glyma05g13920.1 209 2e-53
Glyma17g24130.1 201 2e-51
Glyma05g11190.1 136 1e-31
Glyma19g29260.1 130 5e-30
Glyma05g14390.1 122 2e-27
>Glyma06g46220.1
Length = 840
Score = 1312 bits (3395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/883 (73%), Positives = 723/883 (81%), Gaps = 63/883 (7%)
Query: 36 RHESPPSSCYSHSERKPKCA-FKRVLADNSYAPFKHLSLNDENGSDLHPFEAEITALVRS 94
+H+S P CY HSE+KP+CA FKRV+ADNSY PFKHL +DEN S+ HP+EAEITAL+++
Sbjct: 3 QHKSSP--CYLHSEQKPQCAAFKRVVADNSYTPFKHLINDDENASNSHPYEAEITALLKN 60
Query: 95 PQPEIELSDDFEVVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHSFLGFT 154
P PEIEL E+ DLE DSYVWV TE+ LKELV+ LS+E+FFAVDTEQHSL SFLGFT
Sbjct: 61 PLPEIELGT--EIADLEMKDSYVWVHTEMQLKELVDVLSEERFFAVDTEQHSLRSFLGFT 118
Query: 155 ALVQISTQKKDYLVDTIALHDSMGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNL 214
ALVQIST++KDYLVDTIALHD MGILRP+FANPSICKVFHGADNDI+WLQRDFHIYVVNL
Sbjct: 119 ALVQISTREKDYLVDTIALHDFMGILRPIFANPSICKVFHGADNDIVWLQRDFHIYVVNL 178
Query: 215 FDTSKACEVLSKPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLY 274
FDTSKACEVLSKPQKSLAYLLETYCGV TNKLLQREDWRQRPLSAEM+HYA TDAHYLLY
Sbjct: 179 FDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHYLLY 238
Query: 275 IANCMINELRQLDNENSGSDDKIQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSR 334
IANC+INEL+QLDNENS SDDK FVLEA RRSNMICLQLF K+IEASPGESS LSLFSR
Sbjct: 239 IANCLINELKQLDNENSSSDDKFHFVLEASRRSNMICLQLFKKEIEASPGESSALSLFSR 298
Query: 335 HVSSQDVPSISNETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTE 394
+ Q+ VRQLCTWRDLMARIHDESLKYVLSDQAI ALASQP A+H+E
Sbjct: 299 RI--------------QNIVRQLCTWRDLMARIHDESLKYVLSDQAIVALASQPSASHSE 344
Query: 395 IYKTIARTDINFEMGLNXXXXXXXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQN 454
IY TIA+ DIN EMG+N CSHL+DIY LLANKL N DIYSVI+QKCLGQN
Sbjct: 345 IYNTIAQADINMEMGVNPLIPSPSPVVCSHLSDIYHLLANKLDN--DIYSVILQKCLGQN 402
Query: 455 GICQLSIFNYALLVNGSPRPTSVHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRI 514
G C LSIFNYALLVN + RPT +K KN KQ+SRKASRDLFV+KFSCK+ VYHNCRI
Sbjct: 403 GSCPLSIFNYALLVNSNLRPTLAYKQPGPKNPKQYSRKASRDLFVKKFSCKSAVYHNCRI 462
Query: 515 YANDGRLLCYCDRKKLEWYLSRDLAKLVDDDPPGIMLLFEPKGRPEDEDNDFYIQSKKNI 574
YANDGRLLCYCDR+KLEWYLSRDLAKL+D++PP IMLLFEPKGRPEDE NDFYIQSKKNI
Sbjct: 463 YANDGRLLCYCDRRKLEWYLSRDLAKLIDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNI 522
Query: 575 CVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAA 634
CVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHE+AHAAAEKYKRK+A
Sbjct: 523 CVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKVAV 582
Query: 635 EYGIPLYVRSVIHPREKNEEQTEEGGVSPLQLRTAAMALLRHGPRMPLDRREELTEIVKR 694
E+GIPLY++ V+HP +K E+Q EE GVSPLQLRTAAMALLRHGPRMPL+R EELTEI+KR
Sbjct: 583 EFGIPLYLQRVVHPGQKTEKQIEERGVSPLQLRTAAMALLRHGPRMPLNRHEELTEIIKR 642
Query: 695 YYGGREITEEDLEGALQVGMTPQERRRFEKKRGFSFKHSTESTAAVPQLENHVGCAPGDE 754
YYGGREI++EDLE ALQVGMTP ERRRFEKKRGFSFKHS +TA V + +NH C G
Sbjct: 643 YYGGREISDEDLERALQVGMTPHERRRFEKKRGFSFKHSIGNTATVQKQDNHSSCTAG-- 700
Query: 755 DALNDDAHDGELLMEKDDLGNPLLASDLAVD---AAISN--------GDYNEGGNS-LNV 802
+D N LASD+ V+ +A SN DYNE +S +NV
Sbjct: 701 ---------------MNDFENSTLASDITVNGTASATSNRNMITVETTDYNESSDSAINV 745
Query: 803 DNSLSRTLPNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGE 862
D+S S +E+ L++HNSKLSLLGHGPHG VVE+LLKE+GE+GI
Sbjct: 746 DDSCL-------------SSRQENGLSEHNSKLSLLGHGPHGKRVVEYLLKEYGEDGIRA 792
Query: 863 FCQRWRQVFVDAVNPRFLPGGWDVKHSGRREFGKFSVYNTDKR 905
FCQRWRQVFVDAVNPRFLPGGWDVKHSGRR+FGKFSVYN DKR
Sbjct: 793 FCQRWRQVFVDAVNPRFLPGGWDVKHSGRRDFGKFSVYNPDKR 835
>Glyma12g10530.1
Length = 846
Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/863 (60%), Positives = 599/863 (69%), Gaps = 103/863 (11%)
Query: 71 LSLNDENGSDLHPFEAEITALVRSPQPEIELSDDFEVVDLETNDSYVWVDTEVLLKELVN 130
L L +EN + HP+EAEITAL+++P P+IEL E+ DLE DSYVWV TE L EL++
Sbjct: 58 LRLEEENALNSHPYEAEITALLKNPLPKIELGT--EIADLEMKDSYVWVHTE--LNELID 113
Query: 131 ELSKEKFFAVDTEQHSLHSFLGFTALVQISTQKKDYLVDTIALHDSMGILRPVFANPSIC 190
LS+E+FFAVDTEQHSL SFLGFT LVQIST++KDYLVDTIALHD MGILRPVFANPSIC
Sbjct: 114 VLSEERFFAVDTEQHSLRSFLGFTTLVQISTREKDYLVDTIALHDFMGILRPVFANPSIC 173
Query: 191 KVFHGADNDILWLQRDFHIYVVNLFDTSK-------ACEVLSKPQKSLAYLLETYCGVVT 243
KVFHGADNDI+WLQRDFHIYVV+LFD + ACEV+SKPQKSLAYLLETYCGV T
Sbjct: 174 KVFHGADNDIVWLQRDFHIYVVSLFDILQRPCTGCHACEVMSKPQKSLAYLLETYCGVTT 233
Query: 244 NKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQFVL-E 302
NKLLQREDWRQRPLSAEM+HYA TDAHYLLYIANC+INEL+QLDN N Q +L +
Sbjct: 234 NKLLQREDWRQRPLSAEMVHYAQTDAHYLLYIANCLINELKQLDNGNK------QIILYQ 287
Query: 303 ACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISN--------ETQFQHTV 354
C RS + T P +S+L F R V + + + Q Q+ +
Sbjct: 288 RCARSATHKYGMKT----LLPMTNSIL--FLRLVGRLKLLLENLLHDHYFHVKMQIQNIL 341
Query: 355 RQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEMGLNXXX 414
RQLC+WRDLMARIHDESLKYVLSDQAI ALASQP +H+EIY TIA+ DIN EMG+N
Sbjct: 342 RQLCSWRDLMARIHDESLKYVLSDQAIVALASQPSVSHSEIYSTIAQADINMEMGVNSLI 401
Query: 415 XXXXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLVNGSPRP 474
CSHL+DIY LLANKL N DIYSVI+QKCLGQNG C LSIFNYALLVN + RP
Sbjct: 402 PSLSPVICSHLSDIYHLLANKLDNDDDIYSVILQKCLGQNGSCPLSIFNYALLVNSNLRP 461
Query: 475 TSVHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRKKLEWYL 534
T +K KN KQ+SRKASRDLFVQKFSCK+ VYHNCRIYANDGRLLCYCDR+KLEWYL
Sbjct: 462 TLAYKQPGPKNPKQYSRKASRDLFVQKFSCKSAVYHNCRIYANDGRLLCYCDRRKLEWYL 521
Query: 535 SRDLAKLVDDDPPGIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCY 594
+RDLAKL+D++PP IMLLFEPK +P L IIPSCY
Sbjct: 522 NRDLAKLIDEEPPAIMLLFEPKEKP------------------------LLTVSIIPSCY 557
Query: 595 RIHFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAAEYGIPLYVRSVIHPREKNEE 654
R HFPEHLKSHRSHDIVLLCVD HE+AHAAAEKYKRK + R KN+
Sbjct: 558 RTHFPEHLKSHRSHDIVLLCVDFHEVAHAAAEKYKRKF------------IQVKRLKNK- 604
Query: 655 QTEEGGVSPLQLRTAAMALLRHGPRMPLDRREELTEIVKRYYGGREITEEDLEGALQVGM 714
E V PLQL+TAAMALLRHGPRMPL+R EELTEI+ RYYGGREI++EDLE ALQVGM
Sbjct: 605 --LERAVYPLQLQTAAMALLRHGPRMPLNRHEELTEIINRYYGGREISDEDLERALQVGM 662
Query: 715 TPQERRRFEKKRGFSFKHSTESTAAVPQLENHVGCAPG----DEDALNDDAHDGELLMEK 770
TP ERRRF+KKRGFSFKHS STA VP+ +NH GC D D L DAHDG E+
Sbjct: 663 TPHERRRFKKKRGFSFKHSIGSTATVPKQDNHAGCTTRMNDLDVDTLKVDAHDGSYGNEE 722
Query: 771 DDLGNPLLASDLAVDAAISNGDYNEGGNSLNVDNSLSRTLPNGVSDLFDPSKYEESTLAK 830
+L + + V+ NG +++NVD+S + +E+ L +
Sbjct: 723 TS-ELLILKNMITVETTYYNG---SSDSAVNVDDSCLNS-------------RQENGLGE 765
Query: 831 HNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRWRQVFVDAVNPRFLPGGWDVKH-- 888
HNSKLSLLGHGPHG VVE LLKE+GE+GI FCQRW L + KH
Sbjct: 766 HNSKLSLLGHGPHGKQVVEDLLKEYGEDGIQAFCQRWHPSVSSKKEDTKL--NFYCKHAL 823
Query: 889 -------SGRREFGKFSVYNTDK 904
SGRR+FGKFSVYN DK
Sbjct: 824 IMDTIFASGRRDFGKFSVYNPDK 846
>Glyma05g13920.1
Length = 383
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 190/354 (53%), Gaps = 38/354 (10%)
Query: 50 RKPKCAFKRVLADNSYAPFKHLSLNDENGSD--LHPFEA---------EITALVRSPQPE 98
+KP+ + + DN+ PF H+ L +G +HP E+ ++ +V P
Sbjct: 12 KKPQHEYN-IFVDNTNLPFNHVWLKWSHGEKRFIHPLESLSVMSFVDTDVGDVVPVKAPP 70
Query: 99 IELSDDFEVVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHSFLGFTALVQ 158
IE S F++V+ + LKEL +L FAVD E + +F G T L+Q
Sbjct: 71 IE-STPFKLVETVQD-----------LKELAAKLHSADEFAVDLEHNQYRTFQGLTCLMQ 118
Query: 159 ISTQKKDYLVDTIALHDSMG-ILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDT 217
IST+ +D++VDT+ LH S+G LR VF +PS KV HGADND++WLQRDF IY+ NLFDT
Sbjct: 119 ISTRTEDFIVDTLKLHSSIGPYLREVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLFDT 178
Query: 218 SKACEVLSKPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIAN 277
+A +VL +KSL YLL +C + NK Q DWR RPL EML YA D HYLLYI +
Sbjct: 179 HQASKVLKLERKSLEYLLCHFCDITANKEYQSADWRLRPLPYEMLRYAREDTHYLLYIYD 238
Query: 278 CMINELRQLDNENSGSDDKIQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVS 337
M EL + E D + +E + S +C++L+ K++ + L +
Sbjct: 239 FMRIELFSMLKEPESVDAPL---VEVYKCSYKVCMRLYEKELLTEKSFLRIYGLQGAGFN 295
Query: 338 SQDVPSISNETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPAT 391
+Q + +S L WRD +AR+ D+S YVL +++I +A Q P T
Sbjct: 296 AQQLAVVSG----------LFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVT 339
>Glyma17g24130.1
Length = 871
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 201/362 (55%), Gaps = 35/362 (9%)
Query: 50 RKPKCAFKRVLADNSYAPFKHLSL--NDENGSDLHPFE---------AEITALVRSPQPE 98
R+P+ + ++ +N+ PF+H+ L +D+ S +HP E + +V P
Sbjct: 162 RRPQDEYN-IVVNNANMPFEHVWLQRSDDGLSFIHPLEKLSVLNFVDTNLGDVVPVKPPS 220
Query: 99 IELSDDFEVVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHSFLGFTALVQ 158
IE S F++V+ E D LKEL +L FAVD E + SF G T L+Q
Sbjct: 221 IE-STPFKLVE-EVKD----------LKELAAKLRSVNEFAVDLEHNQYRSFQGLTCLMQ 268
Query: 159 ISTQKKDYLVDTIALHDSMG-ILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDT 217
IST+ +D++VDT+ L +G LR +F +P+ KV HGAD DI WLQRDF IY+ NLFDT
Sbjct: 269 ISTRTEDFIVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIAWLQRDFGIYICNLFDT 328
Query: 218 SKACEVLSKPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIAN 277
+A ++L+ + SL ++L +C V NK Q DWR RPL EM+ YA D HYLLYI +
Sbjct: 329 HQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLYIYD 388
Query: 278 CMINELRQLDNENSGSDDKIQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVS 337
M +L L E+ S+ ++E +RS +C+QL+ K++ E+S L ++ +
Sbjct: 389 LMRIKLFALSKESESSESSDTPLVEVYKRSYDVCIQLYEKELLT---ENSYLHIYGLQGA 445
Query: 338 SQDVPSISNETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYK 397
+ ++ V LC WRD++AR DES YVL ++++ +A Q P T +++ +
Sbjct: 446 GFNAQQLA-------IVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRR 498
Query: 398 TI 399
+
Sbjct: 499 LV 500
>Glyma05g11190.1
Length = 230
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Query: 125 LKELVNELSKEKFFAVDTEQHSLHSFLGFTALVQISTQKKDYLVDTIALHDSMG-ILRPV 183
LKELV +L FAVD E + SF G T L+QIST+ +D++VDT+ L +G LR +
Sbjct: 62 LKELVAKLRSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHIGPYLREI 121
Query: 184 FANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVVT 243
F +P+ KV HGAD DI+WLQRDF IY+ NLFDT +A ++L+ + SL ++L +C V
Sbjct: 122 FKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTHQASKLLNLERNSLEHILHHFCEVTA 181
Query: 244 NKLLQREDWRQRPLSAEMLHY 264
NK Q DWR RPL EML Y
Sbjct: 182 NKEYQNADWRLRPLPNEMLRY 202
>Glyma19g29260.1
Length = 327
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 117/209 (55%), Gaps = 26/209 (12%)
Query: 50 RKPKCAFKRVLADNSYAPFKHLSL--NDENGSDLHPFEA----------EITALVRSPQP 97
+KP+ A+ ++ DNS PF+H+ L +D+ +HP E + LV P
Sbjct: 118 KKPQYAYN-IVVDNSNEPFEHILLEKSDDGQRYIHPLEKLSVLDFVDKENLENLVPVEPP 176
Query: 98 EIELSDDFEVVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHSFLGFTALV 157
IE + V D++ LKE+ LS FAVD E + SF G T L+
Sbjct: 177 SIECTPFKLVEDVKG------------LKEVAAMLSSVNEFAVDLEHNHYRSFQGLTCLM 224
Query: 158 QISTQKKDYLVDTIALHDSMG-ILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFD 216
QIST+ +D+++DT+ + + +G LR VF +P+ KV HGAD DI+WLQRDF IYV N+FD
Sbjct: 225 QISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFD 284
Query: 217 TSKACEVLSKPQKSLAYLLETYCGVVTNK 245
T ++ VL + SL YLL+ +CGV NK
Sbjct: 285 TGQSSRVLKLDRYSLQYLLQQFCGVTANK 313
>Glyma05g14390.1
Length = 247
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 19/163 (11%)
Query: 119 VDTEVLLKELVNELSKEKFFAVDTEQHSL------------------HSFLGFTALVQIS 160
V+T LKEL +L FA+ T SL +F G T L QIS
Sbjct: 32 VETVQDLKELAAKLHSTDEFALKTNITSLCIKFYFELSFLTYYHNQYRTFQGLTCLKQIS 91
Query: 161 TQKKDYLVDTIALHDSM-GILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSK 219
T+ D++V+T+ LH S+ + VF +PS KV HGADND++WLQRDF IY+ NLFDT++
Sbjct: 92 TRTADFIVNTLKLHSSIRPYFKEVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLFDTNE 151
Query: 220 ACEVLSKPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEML 262
A +VL +KSL YLL +C ++ NK Q DWR PL EML
Sbjct: 152 ALKVLKLERKSLEYLLCYFCNIIANKEYQSADWRLCPLPYEML 194