Miyakogusa Predicted Gene

Lj3g3v2906190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2906190.1 Non Chatacterized Hit- tr|J9F006|J9F006_9SPIT
Uncharacterized protein OS=Oxytricha trifallax PE=4
SV,48.98,3e-18,POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED,NULL;
DNA_pol_A_exo1,3'-5' exonuclease domain; HRDC,Hel,gene.g49922.t1.1
         (511 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g10530.1                                                       426   e-119
Glyma06g46220.1                                                       306   3e-83
Glyma05g13920.1                                                        84   4e-16
Glyma05g14390.1                                                        84   5e-16
Glyma19g29260.1                                                        83   7e-16
Glyma17g24130.1                                                        81   3e-15
Glyma05g11190.1                                                        77   4e-14

>Glyma12g10530.1 
          Length = 846

 Score =  426 bits (1096), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/531 (48%), Positives = 302/531 (56%), Gaps = 116/531 (21%)

Query: 71  LQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFE 130
           +Q Q+ +RQLC+WRDLMARIHDESLKYVLSDQAI ALASQP  +H+EIY TIA+ DIN E
Sbjct: 335 MQIQNILRQLCSWRDLMARIHDESLKYVLSDQAIVALASQPSVSHSEIYSTIAQADINME 394

Query: 131 MGLNXXXXXXXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALL 190
           MG+N          CSHL+DIY LLANKL N  DIYSVI+QKCLGQNG C LSIFNYALL
Sbjct: 395 MGVNSLIPSLSPVICSHLSDIYHLLANKLDNDDDIYSVILQKCLGQNGSCPLSIFNYALL 454

Query: 191 VNGSPRPTSVHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDR 250
           VN + RPT  +K    KN KQ+SRKASRDLFVQKFSCK+ VYHNCRIYANDGRLLCYCDR
Sbjct: 455 VNSNLRPTLAYKQPGPKNPKQYSRKASRDLFVQKFSCKSAVYHNCRIYANDGRLLCYCDR 514

Query: 251 KKLEWYLSRDLAKLVDDDPP------EKYKRKIAAEYGIPLYVRS--------------- 289
           +KLEWYL+RDLAKL+D++PP      E  ++ +     IP   R+               
Sbjct: 515 RKLEWYLNRDLAKLIDEEPPAIMLLFEPKEKPLLTVSIIPSCYRTHFPEHLKSHRSHDIV 574

Query: 290 --------VIHP----------REKNEEQTEEGGVSPLQLRTAAMALLRHGPRMPLDRRE 331
                   V H           + K  +   E  V PLQL+TAAMALLRHGPRMPL+R E
Sbjct: 575 LLCVDFHEVAHAAAEKYKRKFIQVKRLKNKLERAVYPLQLQTAAMALLRHGPRMPLNRHE 634

Query: 332 ELTE---------------------------------------------STAAVPQLENH 346
           ELTE                                             STA VP+ +NH
Sbjct: 635 ELTEIINRYYGGREISDEDLERALQVGMTPHERRRFKKKRGFSFKHSIGSTATVPKQDNH 694

Query: 347 VACATG----DEDALNDDAHDGELLMEKDDLGNPLLASDLAVDAAISNGDYNEGGNSLNV 402
             C T     D D L  DAHDG    E+      +L + + V+    NG      +++NV
Sbjct: 695 AGCTTRMNDLDVDTLKVDAHDGSYGNEETS-ELLILKNMITVETTYYNGS---SDSAVNV 750

Query: 403 DNSLSRTLPNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGE 462
           D+S   +              +E+ L +HNSKLSLLGHGPHG  VVE LLKE+GE+GI  
Sbjct: 751 DDSCLNS-------------RQENGLGEHNSKLSLLGHGPHGKQVVEDLLKEYGEDGIQA 797

Query: 463 FCQRWRQVFVDAVNPRFLPGGWDVKH---------SGRREFGKFSVYNTDK 504
           FCQRW            L   +  KH         SGRR+FGKFSVYN DK
Sbjct: 798 FCQRWHPSVSSKKEDTKL--NFYCKHALIMDTIFASGRRDFGKFSVYNPDK 846



 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 69/79 (87%), Gaps = 7/79 (8%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSK-------ACEVLSKPQK 53
           MGILRPVFANPSICKVFHGADNDI+WLQRDFHIYVV+LFD  +       ACEV+SKPQK
Sbjct: 160 MGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVVSLFDILQRPCTGCHACEVMSKPQK 219

Query: 54  SLAYLLETYCGVVTNKLLQ 72
           SLAYLLETYCGV TNKLLQ
Sbjct: 220 SLAYLLETYCGVTTNKLLQ 238


>Glyma06g46220.1 
          Length = 840

 Score =  306 bits (785), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/199 (74%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 72  QFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEM 131
           + Q+ VRQLCTWRDLMARIHDESLKYVLSDQAI ALASQP A+H+EIY TIA+ DIN EM
Sbjct: 299 RIQNIVRQLCTWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIYNTIAQADINMEM 358

Query: 132 GLNXXXXXXXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLV 191
           G+N          CSHL+DIY LLANKL N  DIYSVI+QKCLGQNG C LSIFNYALLV
Sbjct: 359 GVNPLIPSPSPVVCSHLSDIYHLLANKLDN--DIYSVILQKCLGQNGSCPLSIFNYALLV 416

Query: 192 NGSPRPTSVHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRK 251
           N + RPT  +K    KN KQ+SRKASRDLFV+KFSCK+ VYHNCRIYANDGRLLCYCDR+
Sbjct: 417 NSNLRPTLAYKQPGPKNPKQYSRKASRDLFVKKFSCKSAVYHNCRIYANDGRLLCYCDRR 476

Query: 252 KLEWYLSRDLAKLVDDDPP 270
           KLEWYLSRDLAKL+D++PP
Sbjct: 477 KLEWYLSRDLAKLIDEEPP 495



 Score =  254 bits (650), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 145/292 (49%), Positives = 172/292 (58%), Gaps = 87/292 (29%)

Query: 271 EKYKRKIAAEYGIPLYVRSVIHPREKNEEQTEEGGVSPLQLRTAAMALLRHGPRMPLDRR 330
           EKYKRK+A E+GIPLY++ V+HP +K E+Q EE GVSPLQLRTAAMALLRHGPRMPL+R 
Sbjct: 574 EKYKRKVAVEFGIPLYLQRVVHPGQKTEKQIEERGVSPLQLRTAAMALLRHGPRMPLNRH 633

Query: 331 EELTE---------------------------------------------STAAVPQLEN 345
           EELTE                                             +TA V + +N
Sbjct: 634 EELTEIIKRYYGGREISDEDLERALQVGMTPHERRRFEKKRGFSFKHSIGNTATVQKQDN 693

Query: 346 HVACATGDEDALNDDAHDGELLMEKDDLGNPLLASDLAVD---AAISN--------GDYN 394
           H +C  G                  +D  N  LASD+ V+   +A SN         DYN
Sbjct: 694 HSSCTAG-----------------MNDFENSTLASDITVNGTASATSNRNMITVETTDYN 736

Query: 395 EGGNS-LNVDNSLSRTLPNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLK 453
           E  +S +NVD+S               S  +E+ L++HNSKLSLLGHGPHG  VVE+LLK
Sbjct: 737 ESSDSAINVDDSCL-------------SSRQENGLSEHNSKLSLLGHGPHGKRVVEYLLK 783

Query: 454 EFGEEGIGEFCQRWRQVFVDAVNPRFLPGGWDVKHSGRREFGKFSVYNTDKR 505
           E+GE+GI  FCQRWRQVFVDAVNPRFLPGGWDVKHSGRR+FGKFSVYN DKR
Sbjct: 784 EYGEDGIRAFCQRWRQVFVDAVNPRFLPGGWDVKHSGRRDFGKFSVYNPDKR 835



 Score =  152 bits (385), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
           MGILRP+FANPSICKVFHGADNDI+WLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE
Sbjct: 141 MGILRPIFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 200

Query: 61  TYCGVVTNKLLQ 72
           TYCGV TNKLLQ
Sbjct: 201 TYCGVTTNKLLQ 212


>Glyma05g13920.1 
          Length = 383

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR VF +PS  KV HGADND++WLQRDF IY+ NLFDT +A +VL   +KSL YLL  +C
Sbjct: 141 LREVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLFDTHQASKVLKLERKSLEYLLCHFC 200

Query: 64  GVVTNKLLQ 72
            +  NK  Q
Sbjct: 201 DITANKEYQ 209


>Glyma05g14390.1 
          Length = 247

 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 2/78 (2%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
            + VF +PS  KV HGADND++WLQRDF IY+ NLFDT++A +VL   +KSL YLL  +C
Sbjct: 112 FKEVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLFDTNEALKVLKLERKSLEYLLCYFC 171

Query: 64  GVVTNKLLQFQHTVRQLC 81
            ++ NK  ++Q    +LC
Sbjct: 172 NIIANK--EYQSADWRLC 187


>Glyma19g29260.1 
          Length = 327

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 47/66 (71%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR VF +P+  KV HGAD DI+WLQRDF IYV N+FDT ++  VL   + SL YLL+ +C
Sbjct: 248 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQSSRVLKLDRYSLQYLLQQFC 307

Query: 64  GVVTNK 69
           GV  NK
Sbjct: 308 GVTANK 313


>Glyma17g24130.1 
          Length = 871

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P+  KV HGAD DI WLQRDF IY+ NLFDT +A ++L+  + SL ++L  +C
Sbjct: 291 LREIFKDPAKRKVMHGADRDIAWLQRDFGIYICNLFDTHQASKLLNLERNSLEHILHHFC 350

Query: 64  GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVL 99
            V  NK  ++Q+   +L    D M R   E   Y+L
Sbjct: 351 EVTANK--EYQNADWRLRPLPDEMIRYAREDTHYLL 384


>Glyma05g11190.1 
          Length = 230

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 9/107 (8%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P+  KV HGAD DI+WLQRDF IY+ NLFDT +A ++L+  + SL ++L  +C
Sbjct: 118 LREIFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTHQASKLLNLERNSLEHILHHFC 177

Query: 64  GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQ 110
            V  NK  ++Q+       WR  +  + +E L+Y+ +   I  L  +
Sbjct: 178 EVTANK--EYQNA-----DWR--LRPLPNEMLRYISATITIITLCKK 215