Miyakogusa Predicted Gene

Lj3g3v2905160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2905160.1 Non Chatacterized Hit- tr|I1KFD3|I1KFD3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,74.59,0,HRDC,Helicase/RNase D C-terminal, HRDC domain; no
description,NULL; POLYMYOSITIS/SCLERODERMA
AUTOANT,NODE_61206_length_2535_cov_8.537278.path2.1
         (712 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g46220.1                                                      1080   0.0  
Glyma12g10530.1                                                       804   0.0  
Glyma05g13920.1                                                       155   2e-37
Glyma17g24130.1                                                       153   7e-37
Glyma05g14390.1                                                        97   4e-20
Glyma05g11190.1                                                        96   1e-19
Glyma19g29260.1                                                        83   1e-15

>Glyma06g46220.1 
          Length = 840

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/724 (73%), Positives = 587/724 (81%), Gaps = 58/724 (8%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
           MGILRP+FANPSICKVFHGADNDI+WLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE
Sbjct: 141 MGILRPIFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 200

Query: 61  TYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDK 120
           TYCGV TNKLLQREDWRQRPLSAEM+HYA TDAHYLLYIANC+INEL+QLDNENS SDDK
Sbjct: 201 TYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYIANCLINELKQLDNENSSSDDK 260

Query: 121 IQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQ 180
             FVLEA RRSNMICLQLF K+IEASPGESS LSLFSR +              Q+ VRQ
Sbjct: 261 FHFVLEASRRSNMICLQLFKKEIEASPGESSALSLFSRRI--------------QNIVRQ 306

Query: 181 LCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEMGLNXXXXX 240
           LCTWRDLMARIHDESLKYVLSDQAI ALASQP A+H+EIY TIA+ DIN EMG+N     
Sbjct: 307 LCTWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIYNTIAQADINMEMGVNPLIPS 366

Query: 241 XXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLVNGSPRPTS 300
                CSHL+DIY LLANKL N  DIYSVI+QKCLGQNG C LSIFNYALLVN + RPT 
Sbjct: 367 PSPVVCSHLSDIYHLLANKLDN--DIYSVILQKCLGQNGSCPLSIFNYALLVNSNLRPTL 424

Query: 301 VHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRKKLEWYLSR 360
            +K    KN KQ+SRKASRDLFV+KFSCK+ VYHNCRIYANDGRLLCYCDR+KLEWYLSR
Sbjct: 425 AYKQPGPKNPKQYSRKASRDLFVKKFSCKSAVYHNCRIYANDGRLLCYCDRRKLEWYLSR 484

Query: 361 DLAKLVDDDPPGIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 420
           DLAKL+D++PP IMLLFEPKGRPEDE NDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI
Sbjct: 485 DLAKLIDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 544

Query: 421 HFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAAEYGIPLYVRSVIHPREKNEEQT 480
           HFPEHLKSHRSHDIVLLCVDCHE+AHAAAEKYKRK+A E+GIPLY++ V+HP +K E+Q 
Sbjct: 545 HFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKVAVEFGIPLYLQRVVHPGQKTEKQI 604

Query: 481 EEGGVSPLQLRTAAMALLRHGPRMPLDRREELTEIVKRYYGGREITEEDLEGALQVGMTP 540
           EE GVSPLQLRTAAMALLRHGPRMPL+R EELTEI+KRYYGGREI++EDLE ALQVGMTP
Sbjct: 605 EERGVSPLQLRTAAMALLRHGPRMPLNRHEELTEIIKRYYGGREISDEDLERALQVGMTP 664

Query: 541 QERRRFEKKRGFSFKHSTDSTAAVPQLENDVGCAPGDEDALNDDAHDGELLMEKDDLGNP 600
            ERRRFEKKRGFSFKHS  +TA V + +N   C  G                  +D  N 
Sbjct: 665 HERRRFEKKRGFSFKHSIGNTATVQKQDNHSSCTAG-----------------MNDFENS 707

Query: 601 LLASDLAVD---AAISN--------GDYNEGGNS-LNVDNSLSRTLPNGVSDLFDPSKYE 648
            LASD+ V+   +A SN         DYNE  +S +NVD+S               S  +
Sbjct: 708 TLASDITVNGTASATSNRNMITVETTDYNESSDSAINVDDSCL-------------SSRQ 754

Query: 649 ESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRWRQVFVDAVNPRFLPGGW 708
           E+ L++HNSKLSLLGHGPHG  VVE+LLKE+GE+GI  FCQRWRQVFVDAVNPRFLPGGW
Sbjct: 755 ENGLSEHNSKLSLLGHGPHGKRVVEYLLKEYGEDGIRAFCQRWRQVFVDAVNPRFLPGGW 814

Query: 709 DVKH 712
           DVKH
Sbjct: 815 DVKH 818


>Glyma12g10530.1 
          Length = 846

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/711 (61%), Positives = 494/711 (69%), Gaps = 88/711 (12%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSK-------ACEVLSKPQK 53
           MGILRPVFANPSICKVFHGADNDI+WLQRDFHIYVV+LFD  +       ACEV+SKPQK
Sbjct: 160 MGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVVSLFDILQRPCTGCHACEVMSKPQK 219

Query: 54  SLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNE 113
           SLAYLLETYCGV TNKLLQREDWRQRPLSAEM+HYA TDAHYLLYIANC+INEL+QLDN 
Sbjct: 220 SLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYAQTDAHYLLYIANCLINELKQLDNG 279

Query: 114 NSGSDDKIQFVL-EACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISN-- 170
           N       Q +L + C RS      + T      P  +S+L  F R V    +   +   
Sbjct: 280 NK------QIILYQRCARSATHKYGMKT----LLPMTNSIL--FLRLVGRLKLLLENLLH 327

Query: 171 ------ETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIA 224
                 + Q Q+ +RQLC+WRDLMARIHDESLKYVLSDQAI ALASQP  +H+EIY TIA
Sbjct: 328 DHYFHVKMQIQNILRQLCSWRDLMARIHDESLKYVLSDQAIVALASQPSVSHSEIYSTIA 387

Query: 225 RTDINFEMGLNXXXXXXXXXXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLS 284
           + DIN EMG+N          CSHL+DIY LLANKL N  DIYSVI+QKCLGQNG C LS
Sbjct: 388 QADINMEMGVNSLIPSLSPVICSHLSDIYHLLANKLDNDDDIYSVILQKCLGQNGSCPLS 447

Query: 285 IFNYALLVNGSPRPTSVHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGR 344
           IFNYALLVN + RPT  +K    KN KQ+SRKASRDLFVQKFSCK+ VYHNCRIYANDGR
Sbjct: 448 IFNYALLVNSNLRPTLAYKQPGPKNPKQYSRKASRDLFVQKFSCKSAVYHNCRIYANDGR 507

Query: 345 LLCYCDRKKLEWYLSRDLAKLVDDDPPGIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGE 404
           LLCYCDR+KLEWYL+RDLAKL+D++PP IMLLFEPK +P                     
Sbjct: 508 LLCYCDRRKLEWYLNRDLAKLIDEEPPAIMLLFEPKEKP--------------------- 546

Query: 405 GNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAAEYGIPL 464
               L   IIPSCYR HFPEHLKSHRSHDIVLLCVD HE+AHAAAEKYKRK         
Sbjct: 547 ---LLTVSIIPSCYRTHFPEHLKSHRSHDIVLLCVDFHEVAHAAAEKYKRKF-------- 595

Query: 465 YVRSVIHPREKNEEQTEEGGVSPLQLRTAAMALLRHGPRMPLDRREELTEIVKRYYGGRE 524
               +   R KN+    E  V PLQL+TAAMALLRHGPRMPL+R EELTEI+ RYYGGRE
Sbjct: 596 ----IQVKRLKNK---LERAVYPLQLQTAAMALLRHGPRMPLNRHEELTEIINRYYGGRE 648

Query: 525 ITEEDLEGALQVGMTPQERRRFEKKRGFSFKHSTDSTAAVPQLENDVGCAPG----DEDA 580
           I++EDLE ALQVGMTP ERRRF+KKRGFSFKHS  STA VP+ +N  GC       D D 
Sbjct: 649 ISDEDLERALQVGMTPHERRRFKKKRGFSFKHSIGSTATVPKQDNHAGCTTRMNDLDVDT 708

Query: 581 LNDDAHDGELLMEKDDLGNPLLASDLAVDAAISNGDYNEGGNSLNVDNSLSRTLPNGVSD 640
           L  DAHDG    E+      +L + + V+    NG      +++NVD+S   +       
Sbjct: 709 LKVDAHDGSYGNEETS-ELLILKNMITVETTYYNGS---SDSAVNVDDSCLNS------- 757

Query: 641 LFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRW 691
                  +E+ L +HNSKLSLLGHGPHG  VVE LLKE+GE+GI  FCQRW
Sbjct: 758 ------RQENGLGEHNSKLSLLGHGPHGKQVVEDLLKEYGEDGIQAFCQRW 802


>Glyma05g13920.1 
          Length = 383

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/212 (41%), Positives = 119/212 (56%), Gaps = 13/212 (6%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR VF +PS  KV HGADND++WLQRDF IY+ NLFDT +A +VL   +KSL YLL  +C
Sbjct: 141 LREVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLFDTHQASKVLKLERKSLEYLLCHFC 200

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
            +  NK  Q  DWR RPL  EML YA  D HYLLYI + M  EL  +  E    D  +  
Sbjct: 201 DITANKEYQSADWRLRPLPYEMLRYAREDTHYLLYIYDFMRIELFSMLKEPESVDAPL-- 258

Query: 124 VLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCT 183
            +E  + S  +C++L+ K++        +  L     ++Q +  +S           L  
Sbjct: 259 -VEVYKCSYKVCMRLYEKELLTEKSFLRIYGLQGAGFNAQQLAVVSG----------LFK 307

Query: 184 WRDLMARIHDESLKYVLSDQAIGALASQPPAT 215
           WRD +AR+ D+S  YVL +++I  +A Q P T
Sbjct: 308 WRDFVARVKDDSTGYVLPNKSILEIAKQMPVT 339


>Glyma17g24130.1 
          Length = 871

 Score =  153 bits (386), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 129/220 (58%), Gaps = 10/220 (4%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P+  KV HGAD DI WLQRDF IY+ NLFDT +A ++L+  + SL ++L  +C
Sbjct: 291 LREIFKDPAKRKVMHGADRDIAWLQRDFGIYICNLFDTHQASKLLNLERNSLEHILHHFC 350

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
            V  NK  Q  DWR RPL  EM+ YA  D HYLLYI + M  +L  L  E+  S+     
Sbjct: 351 EVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLYIYDLMRIKLFALSKESESSESSDTP 410

Query: 124 VLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCT 183
           ++E  +RS  +C+QL+ K++     E+S L ++    +  +   ++        V  LC 
Sbjct: 411 LVEVYKRSYDVCIQLYEKELLT---ENSYLHIYGLQGAGFNAQQLA-------IVSGLCE 460

Query: 184 WRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTI 223
           WRD++AR  DES  YVL ++++  +A Q P T +++ + +
Sbjct: 461 WRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRRLV 500


>Glyma05g14390.1 
          Length = 247

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 58/83 (69%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
            + VF +PS  KV HGADND++WLQRDF IY+ NLFDT++A +VL   +KSL YLL  +C
Sbjct: 112 FKEVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLFDTNEALKVLKLERKSLEYLLCYFC 171

Query: 64  GVVTNKLLQREDWRQRPLSAEML 86
            ++ NK  Q  DWR  PL  EML
Sbjct: 172 NIIANKEYQSADWRLCPLPYEML 194


>Glyma05g11190.1 
          Length = 230

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 58/85 (68%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P+  KV HGAD DI+WLQRDF IY+ NLFDT +A ++L+  + SL ++L  +C
Sbjct: 118 LREIFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTHQASKLLNLERNSLEHILHHFC 177

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHY 88
            V  NK  Q  DWR RPL  EML Y
Sbjct: 178 EVTANKEYQNADWRLRPLPNEMLRY 202


>Glyma19g29260.1 
          Length = 327

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 47/66 (71%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR VF +P+  KV HGAD DI+WLQRDF IYV N+FDT ++  VL   + SL YLL+ +C
Sbjct: 248 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQSSRVLKLDRYSLQYLLQQFC 307

Query: 64  GVVTNK 69
           GV  NK
Sbjct: 308 GVTANK 313